CuGenDBv2

Gene ID	IVF0012835
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribonuclease H
Genome location	chr07:15855665..15856316
RNA-Seq Expression	IVF0012835
Synteny	IVF0012835
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036950.1 uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa]

4.07e-98

96.45

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Query:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMH+TPARISLLSLFLNSEPHRK+LLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRREDVLG
        EGLGHTKALHIQ+KCKDYVIARVLVDNGSALNIMPKSTLL LPVDMSHIKSSTMVVKAFDGSRRE V+G
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRREDVLG

KAA0037781.1 uncharacterized protein E6C27_scaffold471G00160 [Cucumis melo var. makuwa]

2.11e-99

96.36

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Query:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        M IIAKDIEYKKLVTDEEANEFLK+VKQSEYKII+QMHHTPA+ISLLSLFLNSEPH KVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDD IPP
Subjt:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE

KAA0065724.1 uncharacterized protein E6C27_scaffold37G00080 [Cucumis melo var. makuwa]

2.85e-101

96.32

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Query:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYKKLVTDEEANEFLKIVKQSE KIIEQMHHT ARISLLSLFLNSEPHR+VLLDILNKAHVGHDISVEKFSGIIGNITSSNSIV TDDEIPP
Subjt:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSR
        EGLGHTKALHIQVKCKDYVIARVLVDN S LNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSR
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSR

TYK21788.1 uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]

7.90e-100

98.82

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Query:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRREDVLG
        EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE V+G
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRREDVLG

TYK27304.1 uncharacterized protein E5676_scaffold1784G00170 [Cucumis melo var. makuwa]

2.11e-99

96.36

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Query:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        M IIAKDIEYKKLVTDEEANEFLK+VKQSEYKII+QMHHTPA+ISLLSLFLNSEPH KVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDD IPP
Subjt:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0R1 Uncharacterized protein

2.3e-83

97.58

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Query:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMH+TPARISLLSLFLNSEPHRK+LLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
        EGLGHTKALHIQ+KCKDYVIARVLVDNGSALNIMPKSTLL LPVDMSHIKSSTMVVKAFDGSRRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE

A0A5A7T7R4 Ribonuclease H

7.9e-84

98.18

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Query:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNIT  NSIVFTDDEIPP
Subjt:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVK FDGSRRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE

A0A5A7TRL7 Ribonuclease H

6.1e-84

98.18

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Query:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYK LVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISV+KFSGIIGNITSSNSIVFTDD+IPP
Subjt:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE

A0A5A7VIM6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein

1.1e-82

96.97

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Query:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDIS+EKFSGIIGNITSSN IVFTDD+IPP
Subjt:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVK F+GSRRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE

A0A5D3DEB3 Retrotrans_gag domain-containing protein

1.9e-85

100

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Query:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
        MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP
Subjt:  MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPP

Query:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
        EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE
Subjt:  EGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRRE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCTATCATTGCAAAAGATATAGAATACAAAAAGCTTGTCACGGATGAGGAAGCAAATGAATTCTTGAAAATAGTAAAACAAAGTGAGTATAAGATCATAGAGCAAAT
GCATCATACTCCAGCTCGAATTTCTTTATTATCGTTGTTTTTGAATTCAGAGCCTCATCGCAAAGTGTTATTAGATATTTTGAACAAGGCACATGTCGGACATGACATTT
CAGTGGAAAAGTTTAGTGGAATTATTGGAAACATTACATCTTCAAATTCCATAGTCTTCACAGATGACGAAATTCCTCCTGAAGGCTTAGGCCATACAAAAGCACTGCAT
ATTCAAGTGAAGTGCAAAGACTACGTCATTGCAAGAGTTTTAGTGGATAACGGATCAGCTCTCAATATAATGCCTAAATCTACACTATTGAAGCTTCCCGTGGATATGTC
ACACATAAAATCAAGTACTATGGTTGTGAAAGCTTTCGATGGGTCACGCAGAGAAGACGTCCTTGGATTCACTCCGCAGGAGTGGTGCCATCCACATTGCATCAAAAATT
GA

mRNA sequence

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Protein sequence

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MPIIAKDIEYKKLVTDEEANEFLKIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVFTDDEIPPEGLGHTKALH
IQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIKSSTMVVKAFDGSRREDVLGFTPQEWCHPHCIKN

IVF0012835 (gene) of Melon (IVF77) v1 genome