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IVF0012838 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012838
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Genome locationchr02:6413876..6414277
RNA-Seq ExpressionIVF0012838
SyntenyIVF0012838
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032992.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.67e-5471.97Show/hide
Query:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA
        +SE+ET +EYNERVLEIA ESL LGEKIP+SKIVRKVLRSLPRKFD+K+TA EEAHDITK KLDEL GSL+TFEM IS++E+KKGK +AFKSI E+ET  
Subjt:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA

Query:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT
        N+S  E ++ E I LL KQFS VV+KF+N+NT
Subjt:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT

KAA0035182.1 uncharacterized protein E6C27_scaffold57G002840 [Cucumis melo var. makuwa]1.53e-5473.48Show/hide
Query:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA
        MS++E+ AEYNERVLEIA  S NLGEKI ESKIVRK+L SLP K D+KVTA EEAHDITK KLDEL GSL+TFEM ISNRE+KKG  +A KS+ EEE+  
Subjt:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA

Query:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT
        NKS +  ++NEFIALLTKQFSKVVKKF+NMNT
Subjt:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT

KAA0037580.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.60e-5474.24Show/hide
Query:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA
        MSE+E+ +EYNERVL+I  ESL LGE+IP+SKIVRKVLRSLPRKFD+KVTA EEAHD T  KLDEL GSL+TFEM IS+RE+KKGK I+FKSI EEET  
Subjt:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA

Query:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT
        N+S NE +M+E IALL KQFSKVVKK +NMNT
Subjt:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT

KAA0048662.1 gag-pol polyprotein [Cucumis melo var. makuwa]5.45e-5574.24Show/hide
Query:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA
        MSE+E+ +EYNERVL+IA ESL LGEKIP+SKIVRKVLRSLPRKFD+KVTA EEAHDIT  KLDE+ GSL+TFE AISNRE+KKGK I FKS  EEE   
Subjt:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA

Query:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT
        N S NE +M+E IALLT QFSKVV++FRNMN+
Subjt:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT

KAA0050329.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]4.14e-5675.76Show/hide
Query:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA
        MSE+E+ ++YNERVLEIA ESL LGEKIP+SKIVRKVLRSLPRKFD+KVTA EEAHDIT  KLDEL  SL+TFEMAIS+RE+KKGK +AFKSI EEET  
Subjt:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA

Query:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT
        N+S NE +MNE IALL +QFSKVV+KF+N+NT
Subjt:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT

TrEMBL top hitse value%identityAlignment
A0A5A7T2I7 Gag-pol polyprotein8.4e-4374.24Show/hide
Query:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA
        MSE+E+ +EYNERVL+I  ESL LGE+IP+SKIVRKVLRSLPRKFD+KVTA EEAHD T  KLDEL GSL+TFEM IS+RE+KKGK I+FKSI EEET  
Subjt:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA

Query:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT
        N+S NE +M+E IALL KQFSKVVKK +NMNT
Subjt:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT

A0A5A7TYN0 Gag-pol polyprotein6.4e-4374.24Show/hide
Query:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA
        MSE+E+ +EYNERVL+IA ESL LGEKIP+SKIVRKVLRSLPRKFD+KVTA EEAHDIT  KLDE+ GSL+TFE AISNRE+KKGK I FKS  EEE   
Subjt:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA

Query:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT
        N S NE +M+E IALLT QFSKVV++FRNMN+
Subjt:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT

A0A5A7UA03 Gag-proteinase polyprotein2.0e-4475.76Show/hide
Query:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA
        MSE+E+ ++YNERVLEIA ESL LGEKIP+SKIVRKVLRSLPRKFD+KVTA EEAHDIT  KLDEL  SL+TFEMAIS+RE+KKGK +AFKSI EEET  
Subjt:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA

Query:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT
        N+S NE +MNE IALL +QFSKVV+KF+N+NT
Subjt:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT

A0A5D3D1N8 Gag-pol polyprotein1.9e-4273.48Show/hide
Query:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA
        MSE+E+ +EYNERVL+IA ESL LGEKIP+SKIVRKVLRSLPRKFD+KVTA EEAHDIT  KLDE+ GSL+TFE  ISNRE+KKGK I FKS  EEE   
Subjt:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA

Query:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT
        N S NE +M+E IALLT QFSKVV++FRNMN+
Subjt:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT

A0A5D3E0I8 Gag-pol polyprotein9.9e-4476.52Show/hide
Query:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA
        MSE+E+  EYNERVLEIA ESL LGEKIP+SKIVRKVL+SLPRKFD KVTA E+AHDIT  KLDEL GSL+TFEMAIS+RE+KKGK IAFKS  EEE   
Subjt:  MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPA

Query:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT
        N S NEV+M+E IALLTKQFSKV ++FRNMNT
Subjt:  NKSTNEVSMNEFIALLTKQFSKVVKKFRNMNT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGAAGAGGAAACTAATGCTGAGTACAATGAGAGAGTTTTGGAAATTGCAACTGAATCATTAAATCTTGGAGAGAAGATACCTGAATCTAAGATAGTACGTAAAGT
GTTGCGTTCTTTACCTAGAAAATTTGATGTGAAAGTAACTGCAACAGAGGAAGCACATGATATTACTAAATTTAAACTAGATGAGTTATTGGGTTCTCTAATCACTTTTG
AGATGGCTATATCAAACAGAGAAGATAAGAAGGGAAAATGTATTGCTTTTAAATCTATTTGTGAGGAAGAAACACCTGCTAATAAATCCACTAATGAAGTTAGTATGAAT
GAGTTTATTGCTCTCCTAACAAAACAATTTTCGAAAGTTGTTAAGAAATTCAGAAATATGAATACAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGAAGAGGAAACTAATGCTGAGTACAATGAGAGAGTTTTGGAAATTGCAACTGAATCATTAAATCTTGGAGAGAAGATACCTGAATCTAAGATAGTACGTAAAGT
GTTGCGTTCTTTACCTAGAAAATTTGATGTGAAAGTAACTGCAACAGAGGAAGCACATGATATTACTAAATTTAAACTAGATGAGTTATTGGGTTCTCTAATCACTTTTG
AGATGGCTATATCAAACAGAGAAGATAAGAAGGGAAAATGTATTGCTTTTAAATCTATTTGTGAGGAAGAAACACCTGCTAATAAATCCACTAATGAAGTTAGTATGAAT
GAGTTTATTGCTCTCCTAACAAAACAATTTTCGAAAGTTGTTAAGAAATTCAGAAATATGAATACAAAATGA
Protein sequenceShow/hide protein sequence
MSEEETNAEYNERVLEIATESLNLGEKIPESKIVRKVLRSLPRKFDVKVTATEEAHDITKFKLDELLGSLITFEMAISNREDKKGKCIAFKSICEEETPANKSTNEVSMN
EFIALLTKQFSKVVKKFRNMNTK