CuGenDBv2

Gene ID	IVF0012851
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribosomal protein
Genome location	chr02:13683181..13685051
RNA-Seq Expression	IVF0012851
Synteny	IVF0012851
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000473 - Ribosomal protein L36 IPR035977 - Ribosomal protein L36 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7023520.1 rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.19e-37

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLST A EGPSP L  +               G     P K+EPTML+GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN

XP_004150587.2 uncharacterized protein LOC101223220 [Cucumis sativus]

3.40e-64

75.35

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Query:  EEQSSIFRTAFSRSSQLLTVVLDPRVFAKKSFIFSVKICINTMKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSL-------
        EE+SSI  T FS SSQLLTV LDPRVFAKKSFIFS+ +CIN MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFA EGPSPSL       
Subjt:  EEQSSIFRTAFSRSSQLLTVVLDPRVFAKKSFIFSVKICINTMKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSL-------

Query:  --------LANGAGFSHPPKNEPTMLLGWRMGLASILLKKHN
                L  G     P KNEPTM LGWRMGLASILLKKHN
Subjt:  --------LANGAGFSHPPKNEPTMLLGWRMGLASILLKKHN

XP_008443993.2 PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo]

5.25e-43

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSL +                G     P KNEPTMLLGWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN

XP_022144930.1 uncharacterized protein LOC111014487 [Momordica charantia]

1.58e-37

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFA EGPSP L +                G     P K+EPT + GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN

XP_038879717.1 uncharacterized protein LOC120071478 [Benincasa hispida]

1.11e-37

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFA EGP PSL +                G     P K+EPTMLLGWRMGLASILLKK N
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B8W2 Ribosomal protein

2.2e-32

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSL +                G     P KNEPTMLLGWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN

A0A5A7U4L3 Ribosomal protein

2.2e-32

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSL +                G     P KNEPTMLLGWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN

A0A6J1CT08 Ribosomal protein

3.4e-28

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLA---------------NGAGFSHPPKNEPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLSTFA EGPSP L +                G     P K+EPT + GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLA---------------NGAGFSHPPKNEPTMLLGWRMGLASILLKKHN

A0A6J1HBF8 Ribosomal protein

4.8e-27

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLST A E PSP L  +               G     P K+EPTML+GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN

A0A6J1JBN8 Ribosomal protein

9.8e-28

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKR+GRVY+YCSSNPKHKQRQGLST A EGPSP L  +               G     P K+EPTML GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLAN---------------GAGFSHPPKNEPTMLLGWRMGLASILLKKHN

SwissProt top hits

e value

%identity

Alignment

A5VLI2 50S ribosomal protein L36

1.2e-09

76.32

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

B2G8V5 50S ribosomal protein L36

1.2e-09

76.32

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

B3WAJ5 50S ribosomal protein L36

4.0e-10

78.95

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+RKGRV I CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

Q035A6 50S ribosomal protein L36

4.0e-10

78.95

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+RKGRV I CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

Q03PY0 50S ribosomal protein L36

1.5e-09

73.68

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MKVR SVK MCE C+ +KRKGRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

Arabidopsis top hits

e value

%identity

Alignment

AT5G20180.1 Ribosomal protein L36

2.7e-22

55.77

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLL-------------------ANGAGFSHPPKNEPTMLLGWRMGLASILL
        MKVRSSVKKMCEFC+TVKR+GRVY+ CSSNPKHKQRQG S+FA EG +PS L                   A  A   H  +  PT   GWR GLASIL 
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLL-------------------ANGAGFSHPPKNEPTMLLGWRMGLASILL

Query:  KKHN
        K+ N
Subjt:  KKHN

AT5G20180.2 Ribosomal protein L36

2.7e-22

55.77

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLL-------------------ANGAGFSHPPKNEPTMLLGWRMGLASILL
        MKVRSSVKKMCEFC+TVKR+GRVY+ CSSNPKHKQRQG S+FA EG +PS L                   A  A   H  +  PT   GWR GLASIL 
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLL-------------------ANGAGFSHPPKNEPTMLLGWRMGLASILL

Query:  KKHN
        K+ N
Subjt:  KKHN

ATCG00760.1 ribosomal protein L36

5.0e-08

60.53

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Query:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG
        MK+R+SV+K+CE CR ++R+GR+ + C SNP+HKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQG

Sequences

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CDS sequence

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ATGGATACGGAAGAACAAAGTTCCATATTCCGTACTGCTTTTAGTCGTTCATCTCAGCTGCTGACCGTCGTTCTCGATCCGAGGGTATTTGCTAAGAAATCCTTCATTTT
TTCAGTTAAGATTTGCATCAACACCATGAAAGTCCGTTCTTCGGTGAAAAAGATGTGCGAATTTTGTAGGACAGTGAAGCGTAAAGGCCGAGTATATATATACTGCTCAT
CTAATCCCAAACACAAGCAACGCCAGGGCCTGTCTACATTTGCATGTGAAGGTCCTTCTCCTTCCTTGCTCGCGAATGGGGCTGGCTTCTCTCATCCCCCAAAGAATGAG
CCAACAATGTTGCTTGGTTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAAACACAATTAG

mRNA sequence

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Protein sequence

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MDTEEQSSIFRTAFSRSSQLLTVVLDPRVFAKKSFIFSVKICINTMKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLLANGAGFSHPPKNE
PTMLLGWRMGLASILLKKHN

IVF0012851 (gene) of Melon (IVF77) v1 genome