CuGenDBv2

Gene ID	IVF0012852
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr05:17079409..17079909
RNA-Seq Expression	IVF0012852
Synteny	IVF0012852
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035775.1 retrotransposon protein [Cucumis melo var. makuwa]

1.76e-86

90.23

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Query:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD
        MAEKLLGCQVRAT  IDCRIKTLK+TFQAIAEM +PACSGFGWNDEEKCI+ EKELF+NWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRF ETFAD
Subjt:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS
        VGSNEPGGGYDRFDM DGNE+FPPVYSQG+D+S
Subjt:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS

KAA0042500.1 retrotransposon protein [Cucumis melo var. makuwa]

2.38e-85

91.73

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Query:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD
        MAEKL GCQVRAT  IDCRIKTLKRTFQAIAEM  PACSGFGWNDEEKCI+VEKELF+NWVRSHPAAKGLLNKPFPYYDELTYVFGRDRAT RF ETFAD
Subjt:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS
        VGSNEPGGGYDRFDM DGNE+FPPVYSQGIDLS
Subjt:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS

KAA0049908.1 retrotransposon protein [Cucumis melo var. makuwa]

6.66e-97

100

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Query:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD
        MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD
Subjt:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS
        VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS
Subjt:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS

KAA0057590.1 retrotransposon protein [Cucumis melo var. makuwa]

6.66e-88

90.98

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Query:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD
        MAEKL GCQVRAT  IDCRIKTLKRTFQAIAEM +PACSGFGWNDEEKCI+ EKELF+NWV+SHPAAKGLLNKPFPYYDELTYVF RDRATDRFVETFAD
Subjt:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS
        VGSNEPGGGYDRFDM DGNE+FPPVYSQGIDLS
Subjt:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]

4.69e-85

89.47

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Query:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD
        MAEKL GCQVRAT  IDCRIKTLKRTFQAIAEM  PACSGFGWNDEEKCI+ EKELF+NWVRSHPAAKGLLNKPFPYYDELTYVFGRDRAT RF ETFAD
Subjt:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS
        VGSNEPGGGYDRFDM DGNE+FPPVYSQG+D+S
Subjt:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2T9 Retrotransposon protein

1.7e-67

90.23

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Query:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD
        MAEKLLGCQVRAT  IDCRIKTLK+TFQAIAEM +PACSGFGWNDEEKCI+ EKELF+NWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRF ETFAD
Subjt:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS
        VGSNEPGGGYDRFDM DGNE+FPPVYSQG+D+S
Subjt:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS

A0A5A7TFA4 Retrotransposon protein

3.2e-66

89.47

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Query:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD
        MAEKL GCQVRAT  IDCRIKTLKRTFQAI EM  PACSGFGWNDEEKCI+ EKELF+NWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRF ETFAD
Subjt:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS
        VGSNEPGGGYDRFDM DGNE+FPPVYSQG+D+S
Subjt:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS

A0A5A7TGP1 Retrotransposon protein

1.9e-66

91.73

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Query:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD
        MAEKL GCQVRAT  IDCRIKTLKRTFQAIAEM  PACSGFGWNDEEKCI+VEKELF+NWVRSHPAAKGLLNKPFPYYDELTYVFGRDRAT RF ETFAD
Subjt:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS
        VGSNEPGGGYDRFDM DGNE+FPPVYSQGIDLS
Subjt:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS

A0A5D3CBF5 Retrotransposon protein

1.6e-73

100

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Query:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD
        MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD
Subjt:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS
        VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS
Subjt:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS

A0A5D3DBP4 Retrotransposon protein

1.1e-66

90.98

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Query:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD
        MAEKL GCQVRAT  IDCRIKTLKRTFQAIAEM +PACSGFGWNDEEKCI+ EKELF+NWV+SHPAAKGLLNKPFPYYDELTYVF RDRATDRFVETFAD
Subjt:  MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFAD

Query:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS
        VGSNEPGGGYDRFDM DGNE+FPPVYSQGIDLS
Subjt:  VGSNEPGGGYDRFDMEDGNEEFPPVYSQGIDLS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.2 unknown protein

3.3e-07

27.63

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Query:  RIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRF
        R K L+R +  I  + E   +GF W+     +I + +++N ++++HP A+    K  P Y  L ++FG++ +  R+
Subjt:  RIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRF

AT4G02210.1 unknown protein

2.8e-06

25.96

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Query:  RIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFADVGSNEPGGGYDRFDMEDG
        R K+L+R F AI  +      GF W++E + +  +  ++ +++++H  A+  + +P PYY +L  + G            + +  NE     D FD E  
Subjt:  RIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFADVGSNEPGGGYDRFDMEDG

Query:  NEEF
         +EF
Subjt:  NEEF

AT4G02210.2 unknown protein

2.8e-06

25.96

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Query:  RIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFADVGSNEPGGGYDRFDMEDG
        R K+L+R F AI  +      GF W++E + +  +  ++ +++++H  A+  + +P PYY +L  + G            + +  NE     D FD E  
Subjt:  RIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFADVGSNEPGGGYDRFDMEDG

Query:  NEEF
         +EF
Subjt:  NEEF

Sequences

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CDS sequence

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ATGGCGGAGAAACTACTTGGATGTCAGGTCCGAGCAACGGCTACAATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAGGCCATTGCCGAAATGCCGGAGCCAGC
GTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGTGGAGAAGGAATTATTTAATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCTTGAACAAAC
CATTCCCGTATTACGACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCGATCGGTTCGTTGAGACATTCGCGGACGTCGGGTCTAATGAGCCTGGTGGCGGATAT
GACAGATTTGATATGGAGGATGGAAACGAGGAGTTCCCGCCCGTGTACAGCCAGGGGATTGACCTTTCGTAG

mRNA sequence

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Protein sequence

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MAEKLLGCQVRATATIDCRIKTLKRTFQAIAEMPEPACSGFGWNDEEKCIIVEKELFNNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFVETFADVGSNEPGGGY
DRFDMEDGNEEFPPVYSQGIDLS

IVF0012852 (gene) of Melon (IVF77) v1 genome