CuGenDBv2

Gene ID	IVF0012863
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotran_gag_3 domain-containing protein
Genome location	chr01:10600775..10601206
RNA-Seq Expression	IVF0012863
Synteny	IVF0012863
Gene Ontology terms	GO:0005975 - carbohydrate metabolic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function)
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048199.1 putative mitochondrial protein [Cucumis melo var. makuwa]

3.14e-74

98.41

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Query:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL
        MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL
Subjt:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL

Query:  SRDQALITLINATLSSSALTHVVGSV
        SRDQALITLINATLSSSALTHVV S+
Subjt:  SRDQALITLINATLSSSALTHVVGSV

KAA0056771.1 putative mitochondrial protein [Cucumis melo var. makuwa]

2.63e-76

94.16

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Query:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL
        MATPS QSDL +TSNPIPESSSNP V TSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNS+INP YLQWL
Subjt:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL

Query:  SRDQALITLINATLSSSALTHVVGSVSSKALWLSLEK
        SRDQALITLINATLSSSALTHVVGSV+SKALWLSLEK
Subjt:  SRDQALITLINATLSSSALTHVVGSVSSKALWLSLEK

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]

3.69e-80

95.1

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Query:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL
        MATPSSQSDLP TSNPIPESSSNPSV TSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNS+INP YLQWL
Subjt:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL

Query:  SRDQALITLINATLSSSALTHVVGSVSSKALWLSLEKRYSSNT
        SRDQALITLIN TLSSSAL HVV SVSSKALWLSLEKRYSSNT
Subjt:  SRDQALITLINATLSSSALTHVVGSVSSKALWLSLEKRYSSNT

TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]

2.63e-76

94.16

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Query:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL
        MATPS QSDL +TSNPIPESSSNP V TSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNS+INP YLQWL
Subjt:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL

Query:  SRDQALITLINATLSSSALTHVVGSVSSKALWLSLEK
        SRDQALITLINATLSSSALTHVVGSV+SKALWLSLEK
Subjt:  SRDQALITLINATLSSSALTHVVGSVSSKALWLSLEK

TYK08059.1 retrotransposon protein [Cucumis melo var. makuwa]

2.05e-77

98.41

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Query:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL
        MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL
Subjt:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL

Query:  SRDQALITLINATLSSSALTHVVGSV
        SRDQALITLINATLSSSALTHVV S+
Subjt:  SRDQALITLINATLSSSALTHVVGSV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U426 Putative mitochondrial protein

3.3e-61

96.9

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Query:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL
        MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL
Subjt:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL

Query:  SRDQALITLINATLSSSALTHVVGSVSSK
        SRDQALITLINATLSSSALTHVV S+  K
Subjt:  SRDQALITLINATLSSSALTHVVGSVSSK

A0A5A7UTE5 Putative mitochondrial protein

4.6e-63

94.16

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Query:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL
        MATPS QSDL +TSNPIPESSSNP V TSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNS+INP YLQWL
Subjt:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL

Query:  SRDQALITLINATLSSSALTHVVGSVSSKALWLSLEK
        SRDQALITLINATLSSSALTHVVGSV+SKALWLSLEK
Subjt:  SRDQALITLINATLSSSALTHVVGSVSSKALWLSLEK

A0A5A7UZE5 Putative mitochondrial protein

6.9e-67

95.1

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Query:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL
        MATPSSQSDLP TSNPIPESSSNPSV TSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNS+INP YLQWL
Subjt:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL

Query:  SRDQALITLINATLSSSALTHVVGSVSSKALWLSLEKRYSSNT
        SRDQALITLIN TLSSSAL HVV SVSSKALWLSLEKRYSSNT
Subjt:  SRDQALITLINATLSSSALTHVVGSVSSKALWLSLEKRYSSNT

A0A5D3BEU0 Putative mitochondrial protein

4.6e-63

94.16

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Query:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL
        MATPS QSDL +TSNPIPESSSNP V TSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNS+INP YLQWL
Subjt:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL

Query:  SRDQALITLINATLSSSALTHVVGSVSSKALWLSLEK
        SRDQALITLINATLSSSALTHVVGSV+SKALWLSLEK
Subjt:  SRDQALITLINATLSSSALTHVVGSVSSKALWLSLEK

A0A5D3CCL2 Retrotransposon protein

3.3e-61

96.9

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Query:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL
        MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL
Subjt:  MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWL

Query:  SRDQALITLINATLSSSALTHVVGSVSSK
        SRDQALITLINATLSSSALTHVV S+  K
Subjt:  SRDQALITLINATLSSSALTHVVGSVSSK

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.2e-07

27.97

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Query:  VSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNS--KINPGYLQWLSRDQALITLINATLSSSALTHVV
        V  +T  L  N+ N+   +L STNY++W  QV ++   + L G +D +   PP     +T+GT++  ++NP Y +W  +D+ + + +   +S S    V 
Subjt:  VSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNS--KINPGYLQWLSRDQALITLINATLSSSALTHVV

Query:  GSVSSKALWLSLEKRYSS
         + ++  +W +L K Y++
Subjt:  GSVSSKALWLSLEKRYSS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.4e-08

29.66

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Query:  VSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNS--KINPGYLQWLSRDQALITLINATLSSSALTHVV
        V  +T  L  N+ N+   +L STNY++W  QV ++   + L G +D + P PP     +T+GT++  ++NP Y +W  +D+ + + I   +S S    V 
Subjt:  VSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNS--KINPGYLQWLSRDQALITLINATLSSSALTHVV

Query:  GSVSSKALWLSLEKRYSS
         + ++  +W +L K Y++
Subjt:  GSVSSKALWLSLEKRYSS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCCACCCCTAGCTCCCAATCTGACCTTCCCGAAACCTCCAATCCCATTCCAGAATCCTCATCAAACCCATCTGTTTCCACCTCTACACTCTTTTTGTTATCCAACAT
CTGCAACCTTGTACCCATCCGACTAGATTCTACAAATTACGTTCTCTGGAAATATCAAGTTTCCTCCATCCTCAAAGCCCATTCTCTCTTTGGCCATATTGATGACACCC
TTCCTTGTCCTCCAAAACATTTACCATCTTCAACTCTTGGAACCAACTCCAAAATCAACCCCGGGTATCTTCAATGGCTATCTCGCGACCAAGCTCTCATTACCTTAATA
AACGCCACTCTATCATCCTCTGCCCTTACCCACGTTGTCGGCTCAGTCTCCTCTAAGGCATTGTGGCTTTCTCTAGAGAAACGTTACTCATCCAATACCTGA

mRNA sequence

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Protein sequence

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MATPSSQSDLPETSNPIPESSSNPSVSTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWLSRDQALITLI
NATLSSSALTHVVGSVSSKALWLSLEKRYSSNT

IVF0012863 (gene) of Melon (IVF77) v1 genome