CuGenDBv2

Gene ID	IVF0012903
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA/RNA polymerases superfamily protein
Genome location	chr01:21806158..21806685
RNA-Seq Expression	IVF0012903
Synteny	IVF0012903
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

5.04e-60

83.57

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Query:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL
        MH+NR GKERSGRFV  VSSRG+FKSQYSGSSFSKS SGG AQRSS SSH ISS GGSH+ARS+RVVSESGKSSVCYNC Q  HYRR+CPHLIP  NTIL
Subjt:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL

Query:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF
        KTTSQTV QQ RTT TSGEGSSGGKQKG  GRSRQEGKVF
Subjt:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF

KAA0042144.1 putative polyprotein, identical [Cucumis melo var. makuwa]

3.88e-88

85.14

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Query:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL
        MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL
Subjt:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL

Query:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF--------------------------NVGLKTTLN
        KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF                          NVGLKTTLN
Subjt:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF--------------------------NVGLKTTLN

KAA0042193.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.61e-57

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Query:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL
        +H+NR GK RSG FV GVS++GNFKSQ+SGSSFSKS SGG   RSSGSSHP+ S GGSH+ARSDR + ESGKSSVCYNCGQP HYRR+CP LI  GNT+ 
Subjt:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL

Query:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF
        KT SQT+SQQ +TTRTSGEGSSGGKQKGP G S QEGKV 
Subjt:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF

KAA0060484.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]

1.05e-72

90.71

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Query:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL
        MH+NRQGKERSGRFV GVSSRGNFKSQY+GSSFSKSGS G AQRSSGSSHPISS GGSHIARSDRVVSES KSSVCYNCGQP HYRR+CPHLIP GNTIL
Subjt:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL

Query:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF
        KTTSQTVSQQPR T TSGEGSSGGKQKGP GRSRQEGKVF
Subjt:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]

6.95e-60

83.57

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Query:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL
        MH+NR GKERSGRFV  VSSRG+FKSQYSGSSFSKS SGG AQRSS SSH ISS GGSH+ARS+RVVSESGKSSVCYNC Q  HYRR+CPHLIP  NTIL
Subjt:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL

Query:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF
        KTTSQTV QQ RTT TSGEGSSGGKQKG  GRSRQEGKVF
Subjt:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1M0 Reverse transcriptase

2.7e-50

83.57

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Query:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL
        MH+NR GKERSGRFV  VSSRG+FKSQYSGSSFSKS SGG AQRSS SSH ISS GGSH+ARS+RVVSESGKSSVCYNC Q  HYRR+CPHLIP  NTIL
Subjt:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL

Query:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF
        KTTSQTV QQ RTT TSGEGSSGGKQKG  GRSRQEGKVF
Subjt:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF

A0A5A7TFE2 Putative polyprotein, identical

3.4e-69

85.14

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Query:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL
        MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL
Subjt:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL

Query:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEG--------------------------KVFNVGLKTTLN
        KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEG                          KVFNVGLKTTLN
Subjt:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEG--------------------------KVFNVGLKTTLN

A0A5A7TG44 DNA/RNA polymerases superfamily protein

1.4e-46

75.54

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Query:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL
        +H+NR GK RSG FV GVS++GNFKSQ+SGSSFSKS SGG   RSSGSSHP+ S GGSH+ARSDR + ESGKSSVCYNCGQP HYRR+CP LI  GNT+ 
Subjt:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL

Query:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKV
        KT SQT+SQQ +TTRTSGEGSSGGKQKGP G S QEGKV
Subjt:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKV

A0A5A7UZM6 Gag protease polyprotein-like protein

3.2e-59

90.71

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Query:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL
        MH+NRQGKERSGRFV GVSSRGNFKSQY+GSSFSKSGS G AQRSSGSSHPISS GGSHIARSDRVVSES KSSVCYNCGQP HYRR+CPHLIP GNTIL
Subjt:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL

Query:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF
        KTTSQTVSQQPR T TSGEGSSGGKQKGP GRSRQEGKVF
Subjt:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF

A0A5D3BB91 Reverse transcriptase

2.7e-50

83.57

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Query:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL
        MH+NR GKERSGRFV  VSSRG+FKSQYSGSSFSKS SGG AQRSS SSH ISS GGSH+ARS+RVVSESGKSSVCYNC Q  HYRR+CPHLIP  NTIL
Subjt:  MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTIL

Query:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF
        KTTSQTV QQ RTT TSGEGSSGGKQKG  GRSRQEGKVF
Subjt:  KTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCATCAAAATCGACAAGGTAAAGAAAGAAGTGGAAGATTTGTGCTCGGGGTGTCTAGTAGAGGGAATTTTAAGTCTCAGTATAGTGGTTCTTCTTTCTCTAAATCGGG
ATCAGGCGGAAGAGCCCAGAGATCGAGTGGTTCTAGTCATCCTATATCTTCTCCAGGAGGTTCTCATATTGCTCGATCAGATAGGGTTGTATCAGAATCTGGCAAGAGTA
GTGTATGTTATAACTGCGGTCAGCCAGAACATTACCGTAGAAACTGTCCACATCTGATACCAGTGGGTAATACTATCTTGAAAACCACTTCTCAGACAGTAAGCCAGCAA
CCAAGAACCACGAGAACTAGTGGTGAAGGCTCTAGTGGGGGAAAACAGAAAGGACCAGCGGGTCGCTCTCGCCAGGAAGGGAAGGTCTTTAATGTCGGTTTAAAAACGAC
ATTAAACTGA

mRNA sequence

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Protein sequence

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MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSSGSSHPISSPGGSHIARSDRVVSESGKSSVCYNCGQPEHYRRNCPHLIPVGNTILKTTSQTVSQQ
PRTTRTSGEGSSGGKQKGPAGRSRQEGKVFNVGLKTTLN

IVF0012903 (gene) of Melon (IVF77) v1 genome