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IVF0012952 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0012952
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr09:12205191..12205457
RNA-Seq ExpressionIVF0012952
SyntenyIVF0012952
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062295.1 hypothetical protein E6C27_scaffold154G00380 [Cucumis melo var. makuwa]2.06e-3778.16Show/hide
Query:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLI
        MCDASDVV+G M GQK DKV  PIY   KTLNEA+ENYTT EKELLA+VFAIEK+ SYIVGSKVTIHSDH AIRYLM KKDA+  LI
Subjt:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLI

KAA0062414.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]8.65e-55100Show/hide
Query:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR
        MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR
Subjt:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR

MCI26715.1 hypothetical protein [Trifolium medium]7.70e-3368.18Show/hide
Query:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR
        MCDASD VVG + GQ+ DK    IYYA +TLNEA+ NYTT EKELLA+VFA +KFRSY+VG+KV +++DHSAI+YL+AKKDAK  LIR
Subjt:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR

TYK26567.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.98e-54100Show/hide
Query:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR
        MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR
Subjt:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR

WP_217833163.1 Ty3/Gypsy family RNase HI domain-containing protein, partial [Synechococcus sp. PCC 7002]5.56e-3670.45Show/hide
Query:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR
        MCDAS+ VVG + GQ+K+K+  PIYYA KTLN  +ENYTT EKE+LAIVFA++KFR+Y +GSKVTI+SDHSAI+YLM KKDAK  LIR
Subjt:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR

TrEMBL top hitse value%identityAlignment
A0A2G9H400 Reverse transcriptase3.1e-2565.91Show/hide
Query:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR
        MCDASD  +G + GQ+KDK+   IYYA KTLN+A+ NYTT EKELLA+VFA +KFRSY+VG+KV +++DH+AIRYL+ KKDA  WLIR
Subjt:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR

A0A2G9HH15 Reverse transcriptase6.2e-2667.05Show/hide
Query:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR
        MCDASD  +G + GQ+KDK+   IYYA KTLN+A+ NYTT EKELLA+VFA +KFRSY+VG+KV +++DH+AIRYL+ KKDAK WLIR
Subjt:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR

A0A5A7V586 Retrovirus-related Pol polyprotein from transposon 17.65.2e-41100Show/hide
Query:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR
        MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR
Subjt:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR

A0A5A7V8R9 RT_RNaseH domain-containing protein1.5e-2778.16Show/hide
Query:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLI
        MCDASDVV+G M GQK DKV  PIY   KTLNEA+ENYTT EKELLA+VFAIEK+ SYIVGSKVTIHSDH AIRYLM KKDA+  LI
Subjt:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLI

A0A5D3DS34 Retrovirus-related Pol polyprotein from transposon 17.65.2e-41100Show/hide
Query:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR
        MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR
Subjt:  MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.4e-1147.67Show/hide
Query:  DASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR
        DASDV +G +  Q       P+ Y  +TLNE E NY+TIEKELLAIV+A + FR Y++G    I SDH  + +L   KD  S L R
Subjt:  DASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR

P10394 Retrovirus-related Pol polyprotein from transposon 4125.2e-0636.05Show/hide
Query:  DASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR
        DAS    G +  Q  +    P+ YA +   + E N +T E+EL AI +AI  FR YI G   T+ +DH  + YL +  +  S L R
Subjt:  DASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR

P10401 Retrovirus-related Pol polyprotein from transposon gypsy2.0e-0535.82Show/hide
Query:  PIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSK-VTIHSDHSAIRYLMAKKDAKSWLIR
        PI    +TL + E+NY T E+ELLAIV+A+ K ++++ GS+ + I +DH  + + +A ++  + + R
Subjt:  PIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSK-VTIHSDHSAIRYLMAKKDAKSWLIR

P20825 Retrovirus-related Pol polyprotein from transposon 2978.6e-0941.86Show/hide
Query:  DASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR
        DAS++ +G +  Q       PI +  +TLN+ E NY+ IEKELLAIV+A + FR Y++G +  I SDH  +R+L   K+  + L R
Subjt:  DASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.5e-0833.33Show/hide
Query:  DASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGS-KVTIHSDHSAIRYLMAKKDAKSWLIR
        DAS+  +G +  Q       PI Y  ++LN+ EENY TIEKE+LAI+++++  R+Y+ G+  + +++DH  + + +  ++  + L R
Subjt:  DASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGS-KVTIHSDHSAIRYLMAKKDAKSWLIR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGACGCAAGTGATGTGGTGGTAGGGGATATGCCGGGTCAAAAGAAGGATAAAGTGACTGACCCGATATACTATGCGATCAAAACTCTCAATGAAGCTGAAGAAAA
TTATACAACCATAGAGAAGGAGTTGCTTGCAATAGTCTTTGCGATAGAAAAGTTTAGGAGTTACATTGTTGGCTCCAAAGTAACGATACACTCTGATCATTCTGCGATCA
GATATCTCATGGCGAAAAAGGACGCTAAGTCGTGGTTGATAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGACGCAAGTGATGTGGTGGTAGGGGATATGCCGGGTCAAAAGAAGGATAAAGTGACTGACCCGATATACTATGCGATCAAAACTCTCAATGAAGCTGAAGAAAA
TTATACAACCATAGAGAAGGAGTTGCTTGCAATAGTCTTTGCGATAGAAAAGTTTAGGAGTTACATTGTTGGCTCCAAAGTAACGATACACTCTGATCATTCTGCGATCA
GATATCTCATGGCGAAAAAGGACGCTAAGTCGTGGTTGATAAGATAG
Protein sequenceShow/hide protein sequence
MCDASDVVVGDMPGQKKDKVTDPIYYAIKTLNEAEENYTTIEKELLAIVFAIEKFRSYIVGSKVTIHSDHSAIRYLMAKKDAKSWLIR