CuGenDBv2

Gene ID	IVF0013143
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr05:17056571..17056996
RNA-Seq Expression	IVF0013143
Synteny	IVF0013143
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0049911.1 retrotransposon protein [Cucumis melo var. makuwa]

4.15e-92

99.29

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Query:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS
        MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS
Subjt:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS

Query:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER
        LDRTLLQRH LSCMDDLRSFVLLPEDEREGFCRVILRDIER
Subjt:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER

KAA0054705.1 retrotransposon protein [Cucumis melo var. makuwa]

7.97e-87

93.62

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Query:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS
        M D NE+FPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQL+QIAEWPA NLANDNHVRTEFFCILREMPELTS
Subjt:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS

Query:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER
        LDR LLQRHLLSCMDDLR FVL+PEDEREGFCRV+LRDIER
Subjt:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER

KAA0058875.1 retrotransposon protein [Cucumis melo var. makuwa]

1.28e-83

90.78

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Query:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS
        M D NE+FPPVYSQG+D+SQDDVRASRPSRA EGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQL+QIAEWPARNLANDNHVRTEFFCILREMPELTS
Subjt:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS

Query:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER
        LDR LLQRHLLS MDDLR FVL+PEDERE FCRV+LRDIER
Subjt:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER

KAA0065821.1 retrotransposon protein [Cucumis melo var. makuwa]

1.40e-83

90.07

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Query:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS
        M D N++FPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDF++EAIHLALDQTNEQL+QIAEWPARNLANDNHVRT+FFCILREMPELT+
Subjt:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS

Query:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER
        LDR LLQRHLLS MDDLR FVL+PEDEREGFCRV+LRDIER
Subjt:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER

TYK07652.1 retrotransposon protein [Cucumis melo var. makuwa]

1.02e-92

100

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Query:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS
        MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS
Subjt:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS

Query:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER
        LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER
Subjt:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U8I3 Retrotransposon protein

9.2e-72

99.29

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Query:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS
        MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS
Subjt:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS

Query:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER
        LDRTLLQRH LSCMDDLRSFVLLPEDEREGFCRVILRDIER
Subjt:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER

A0A5A7UZ66 Retrotransposon protein

3.7e-65

90.78

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Query:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS
        M D NE+FPPVYSQG+D+SQDDVRASRPSRA EGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQL+QIAEWPARNLANDNHVRTEFFCILREMPELTS
Subjt:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS

Query:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER
        LDR LLQRHLLS MDDLR FVL+PEDERE FCRV+LRDIER
Subjt:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER

A0A5A7VJG4 Retrotransposon protein

6.4e-65

90.07

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Query:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS
        M D N++FPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDF++EAIHLALDQTNEQL+QIAEWPARNLANDNHVRT+FFCILREMPELT+
Subjt:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS

Query:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER
        LDR LLQRHLLS MDDLR FVL+PEDEREGFCRV+LRDIER
Subjt:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER

A0A5D3B6Y0 Retrotransposon protein

1.8e-67

93.62

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Query:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS
        M D NE+FPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQL+QIAEWPA NLANDNHVRTEFFCILREMPELTS
Subjt:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS

Query:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER
        LDR LLQRHLLSCMDDLR FVL+PEDEREGFCRV+LRDIER
Subjt:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER

A0A5D3C8P0 Retrotransposon protein

3.1e-72

100

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Query:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS
        MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS
Subjt:  MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTS

Query:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER
        LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER
Subjt:  LDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGGGATGAAAACGAGGAGTTCCCGCCCGTGTACAGCCAGGGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGG
ATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAAGCAGATTGCGGAGTGGC
CTGCACGGAACCTTGCAAATGACAACCATGTGCGCACGGAATTCTTCTGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTT
TTGTCTTGTATGGACGACCTTCGGAGTTTCGTACTCTTGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCATCCTACGAGACATAGAGAGATAG

mRNA sequence

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Protein sequence

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MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHL
LSCMDDLRSFVLLPEDEREGFCRVILRDIER

IVF0013143 (gene) of Melon (IVF77) v1 genome