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IVF0013164 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013164
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr11:17097502..17097756
RNA-Seq ExpressionIVF0013164
SyntenyIVF0013164
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062097.1 Pol polyprotein [Cucumis melo var. makuwa]2.98e-4097.3Show/hide
Query:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIK
        MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHS+ K
Subjt:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIK

KAA0062295.1 hypothetical protein E6C27_scaffold154G00380 [Cucumis melo var. makuwa]2.37e-2867.47Show/hide
Query:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYLVAKEDAK
        M D SDVV+ AMLGQK DKVI+ IY  SKTLNEA+ENY T EKELL VVF +EKY SYIVG +VT+H DH  I+YL+ K+DA+
Subjt:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYLVAKEDAK

KAA0062414.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.65e-3070.24Show/hide
Query:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYLVAKEDAKS
        M D SDVVV  M GQKKDKV   IYYA KTLNEAEENY T+EKELL +VF +EK++SYIVG +VT+H DHS I+YL+AK+DAKS
Subjt:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYLVAKEDAKS

TYK04930.1 Pol polyprotein [Cucumis melo var. makuwa]2.98e-4097.3Show/hide
Query:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIK
        MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHS+ K
Subjt:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIK

TYK26567.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]3.45e-3070.24Show/hide
Query:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYLVAKEDAKS
        M D SDVVV  M GQKKDKV   IYYA KTLNEAEENY T+EKELL +VF +EK++SYIVG +VT+H DHS I+YL+AK+DAKS
Subjt:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYLVAKEDAKS

TrEMBL top hitse value%identityAlignment
A0A5A7V575 Pol polyprotein1.2e-3197.3Show/hide
Query:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIK
        MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHS+ K
Subjt:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIK

A0A5A7V586 Retrovirus-related Pol polyprotein from transposon 17.61.4e-2270.24Show/hide
Query:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYLVAKEDAKS
        M D SDVVV  M GQKKDKV   IYYA KTLNEAEENY T+EKELL +VF +EK++SYIVG +VT+H DHS I+YL+AK+DAKS
Subjt:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYLVAKEDAKS

A0A5A7V8R9 RT_RNaseH domain-containing protein9.8e-2167.47Show/hide
Query:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYLVAKEDAK
        M D SDVV+ AMLGQK DKVI+ IY  SKTLNEA+ENY T EKELL VVF +EKY SYIVG +VT+H DH  I+YL+ K+DA+
Subjt:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYLVAKEDAK

A0A5D3C0M6 Pol polyprotein1.2e-3197.3Show/hide
Query:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIK
        MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHS+ K
Subjt:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIK

A0A5D3DS34 Retrovirus-related Pol polyprotein from transposon 17.61.4e-2270.24Show/hide
Query:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYLVAKEDAKS
        M D SDVVV  M GQKKDKV   IYYA KTLNEAEENY T+EKELL +VF +EK++SYIVG +VT+H DHS I+YL+AK+DAKS
Subjt:  MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYLVAKEDAKS

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.0e-0737.8Show/hide
Query:  DTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYLVAKEDAKS
        D SDV + A+L Q      H + Y S+TLNE E NY T+EKELL +V+  + ++ Y++G    +  DH  + +L   +D  S
Subjt:  DTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYLVAKEDAKS

P20825 Retrovirus-related Pol polyprotein from transposon 2975.5e-0533.78Show/hide
Query:  DTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYL
        D S++ + A+L Q      H I + S+TLN+ E NY  +EKELL +V+  + ++ Y++G +  +  DH  +++L
Subjt:  DTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus4.7e-0428.75Show/hide
Query:  DTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGY-EVTMHYDHSVIKYLVAKED
        D S+  + A+L Q        I Y S++LN+ EENY T+EKE+L +++ ++  ++Y+ G   + ++ DH  + + +   +
Subjt:  DTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGY-EVTMHYDHSVIKYLVAKED

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACGACACGAGTGATGTGGTAGTATGGGCTATGCTGGGTCAAAAGAAAGATAAAGTTATCCACTTGATATACTACGCGAGTAAAACTTTGAATGAAGCTGAAGAGAA
CTACATGACTGTAGAAAAAGAGTTACTCGTCGTAGTGTTTGTAGTCGAAAAGTACAAGAGCTACATTGTTGGTTATGAAGTCACGATGCATTATGATCATTCTGTGATCA
AATACTTAGTGGCAAAGGAAGATGCCAAGTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTACGACACGAGTGATGTGGTAGTATGGGCTATGCTGGGTCAAAAGAAAGATAAAGTTATCCACTTGATATACTACGCGAGTAAAACTTTGAATGAAGCTGAAGAGAA
CTACATGACTGTAGAAAAAGAGTTACTCGTCGTAGTGTTTGTAGTCGAAAAGTACAAGAGCTACATTGTTGGTTATGAAGTCACGATGCATTATGATCATTCTGTGATCA
AATACTTAGTGGCAAAGGAAGATGCCAAGTCATAG
Protein sequenceShow/hide protein sequence
MYDTSDVVVWAMLGQKKDKVIHLIYYASKTLNEAEENYMTVEKELLVVVFVVEKYKSYIVGYEVTMHYDHSVIKYLVAKEDAKS