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IVF0013196 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013196
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr08:15151829..15152871
RNA-Seq ExpressionIVF0013196
SyntenyIVF0013196
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050190.1 retrotransposon protein [Cucumis melo var. makuwa]2.36e-5746.81Show/hide
Query:  MASSSHASKHVWTKEEKAILVECLVEPGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRND
        MA+SS A KHVWTKEEK  LVECLVE                  HP AKGL NK  PYYDELAYVF  DR      +TF DV SN P  Y+ F + D N+
Subjt:  MASSSHASKHVWTKEEKAILVECLVEPGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRND

Query:  IEIPTMYNQGFNMSK----------------RIYGPHDLVEHPMRVEHVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMV
         E P+MY+QG +MS+                R  G     E   + E +++IH A++C NDQLR I EWP+ AL N+T VRQE+L  LH +PEL+ LD V
Subjt:  IEIPTMYNQGFNMSK----------------RIYGPHDLVEHPMRVEHVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMV

Query:  HCSRILFCNLDDMRGFLEILEDEKMDFCTVLLREL
         C R L   +DDMRGF+++++DE+ +FC VLL ++
Subjt:  HCSRILFCNLDDMRGFLEILEDEKMDFCTVLLREL

KAA0051644.1 retrotransposon protein [Cucumis melo var. makuwa]2.13e-5851.69Show/hide
Query:  WTKEEKAILVECLVEPGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRNDIEIPTMYNQGF
        W  E K I+VE         NL + W      TH  AKGLLN   PYY++LAYVF RDRA  RG ETF DV+SN   GYE FQ+ D ND+EIPTMY+QGF
Subjt:  WTKEEKAILVECLVEPGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRNDIEIPTMYNQGF

Query:  NMSKRIYGPHDLVEHPMRVEHVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCNLDDMRGFLEILEDEKMDF
        +MS+                             D LRAIVE P   LQ+ETT+R+EVL QL+A+P+LSRLD  HCS  LF +LDDM GF+EI+E+E+MD+
Subjt:  NMSKRIYGPHDLVEHPMRVEHVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCNLDDMRGFLEILEDEKMDF

Query:  CTVLLRE
        CTVLLRE
Subjt:  CTVLLRE

KAA0054019.1 retrotransposon protein [Cucumis melo var. makuwa]1.49e-6153.08Show/hide
Query:  SKHVWTKEEKAILVECLVEPGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRNDIEIPTMY
        S+  W  E K I+ E         +LS+ W R     HP AK LLNK  PYYDELAYVF++DRATGRG ETF D+ SNDP+ YEGFQ  D ND+EIPT+Y
Subjt:  SKHVWTKEEKAILVECLVEPGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRNDIEIPTMY

Query:  NQGFNMSKRIYGPHDLVEHPMRVEHVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCNLDDMRGFLEILEDE
        +QGFNMS+                             + L+ IVEW SVALQNET VRQEVL QL AIP+LSRLD   C +ILF +LDDM+GFLEI +++
Subjt:  NQGFNMSKRIYGPHDLVEHPMRVEHVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCNLDDMRGFLEILEDE

Query:  KMDFCTVLLRE
        K+DF T+LLRE
Subjt:  KMDFCTVLLRE

KAA0056139.1 retrotransposon protein [Cucumis melo var. makuwa]4.90e-13182.2Show/hide
Query:  MASSSHASKHVWTKEEKAILVECLVE---PGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHD
        MASSSHASKHVWTKEEKAILVECLVE    G W        +S  DT   A+GLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDP+GYEGFQLHD
Subjt:  MASSSHASKHVWTKEEKAILVECLVE---PGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHD

Query:  RNDIEIPTMYNQGFNMSKRIYGPHDLVEHPM---------------RVEHVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLD
        RNDIEIPTMYNQGFNMS+RIYGPHDLVEHPM               RVEHVDLIHKAMKCANDQLR IVEW SVALQNETTV QEVLCQLHAIPELSRLD
Subjt:  RNDIEIPTMYNQGFNMSKRIYGPHDLVEHPM---------------RVEHVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLD

Query:  MVHCSRILFCNLDDMRGFLEILEDEKMDFCTVLLRE
         VH SRILFCNLDDMRGFLEILEDEKMDFCTVLLRE
Subjt:  MVHCSRILFCNLDDMRGFLEILEDEKMDFCTVLLRE

TYK14144.1 retrotransposon protein [Cucumis melo var. makuwa]5.03e-12092.97Show/hide
Query:  KGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRNDIEIPTMYNQGFNMSKRIYGPHDLVEHPMRVEHVDLIHKAMKCANDQLR
        KGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRNDIEIPTMYNQGFNMSKRIYGPHDLVEHPM             CANDQLR
Subjt:  KGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRNDIEIPTMYNQGFNMSKRIYGPHDLVEHPMRVEHVDLIHKAMKCANDQLR

Query:  AIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCNLDDMRGFLEILEDEKMDFCTVLLRELLNVLLLPPPDFMFF
        AIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCNLDDMRGFLEILEDEKMDFCTVLLRELLNVLLLPPPDFMFF
Subjt:  AIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCNLDDMRGFLEILEDEKMDFCTVLLRELLNVLLLPPPDFMFF

TrEMBL top hitse value%identityAlignment
A0A5A7U4I8 Retrotransposon protein2.4e-4546.58Show/hide
Query:  MASSSHASKHVWTKEEKAILVECLVEPGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRND
        MA+SS A KHVWTKEEK  LVECLVE                 +HP AKGL NK  PYYDELAYVF  DR      +TF DV SN P  Y+ F + D N+
Subjt:  MASSSHASKHVWTKEEKAILVECLVEPGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRND

Query:  IEIPTMYNQGFNMSK---RIYGPHDLVEHPMRVE------------HVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVH
         E P+MY+QG +MS+   R   P    +  +R               +++IH A++C NDQLR I EWP+ AL N+T VRQE+L  LH +PEL+ LD V 
Subjt:  IEIPTMYNQGFNMSK---RIYGPHDLVEHPMRVE------------HVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVH

Query:  CSRILFCNLDDMRGFLEILEDEKMDFCTVLLREL
        C R L   +DDMRGF+++++DE+ +FC VLL ++
Subjt:  CSRILFCNLDDMRGFLEILEDEKMDFCTVLLREL

A0A5A7URM1 Retrotransposon protein1.4e-10182.2Show/hide
Query:  MASSSHASKHVWTKEEKAILVECLVE---PGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHD
        MASSSHASKHVWTKEEKAILVECLVE    G W        +S  DT   A+GLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDP+GYEGFQLHD
Subjt:  MASSSHASKHVWTKEEKAILVECLVE---PGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHD

Query:  RNDIEIPTMYNQGFNMSKRIYGPHDLVEHPM---------------RVEHVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLD
        RNDIEIPTMYNQGFNMS+RIYGPHDLVEHPM               RVEHVDLIHKAMKCANDQLR IVEW SVALQNETTV QEVLCQLHAIPELSRLD
Subjt:  RNDIEIPTMYNQGFNMSKRIYGPHDLVEHPM---------------RVEHVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLD

Query:  MVHCSRILFCNLDDMRGFLEILEDEKMDFCTVLLRE
         VH SRILFCNLDDMRGFLEILEDEKMDFCTVLLRE
Subjt:  MVHCSRILFCNLDDMRGFLEILEDEKMDFCTVLLRE

A0A5D3BFC4 Retrotransposon protein1.9e-4551.69Show/hide
Query:  WTKEEKAILVECLVEPGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRNDIEIPTMYNQGF
        W  E K I+VE         NL + W      TH  AKGLLN   PYY++LAYVF RDRA  RG ETF DV+SN   GYE FQ+ D ND+EIPTMY+QGF
Subjt:  WTKEEKAILVECLVEPGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRNDIEIPTMYNQGF

Query:  NMSKRIYGPHDLVEHPMRVEHVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCNLDDMRGFLEILEDEKMDF
        +MS+                             D LRAIVE P   LQ+ETT+R+EVL QL+A+P+LSRLD  HCS  LF +LDDM GF+EI+E+E+MD+
Subjt:  NMSKRIYGPHDLVEHPMRVEHVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCNLDDMRGFLEILEDEKMDF

Query:  CTVLLRE
        CTVLLRE
Subjt:  CTVLLRE

A0A5D3CSY3 Retrotransposon protein1.8e-9392.97Show/hide
Query:  KGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRNDIEIPTMYNQGFNMSKRIYGPHDLVEHPMRVEHVDLIHKAMKCANDQLR
        KGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRNDIEIPTMYNQGFNMSKRIYGPHDLVEHPM             CANDQLR
Subjt:  KGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRNDIEIPTMYNQGFNMSKRIYGPHDLVEHPMRVEHVDLIHKAMKCANDQLR

Query:  AIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCNLDDMRGFLEILEDEKMDFCTVLLRELLNVLLLPPPDFMFF
        AIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCNLDDMRGFLEILEDEKMDFCTVLLRELLNVLLLPPPDFMFF
Subjt:  AIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCNLDDMRGFLEILEDEKMDFCTVLLRELLNVLLLPPPDFMFF

A0A5D3DB07 Retrotransposon protein5.2e-4853.08Show/hide
Query:  SKHVWTKEEKAILVECLVEPGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRNDIEIPTMY
        S+  W  E K I+ E         +LS+ W R     HP AK LLNK  PYYDELAYVF++DRATGRG ETF D+ SNDP+ YEGFQ  D ND+EIPT+Y
Subjt:  SKHVWTKEEKAILVECLVEPGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRNDIEIPTMY

Query:  NQGFNMSKRIYGPHDLVEHPMRVEHVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCNLDDMRGFLEILEDE
        +QGFNMS+                             + L+ IVEW SVALQNET VRQEVL QL AIP+LSRLD   C +ILF +LDDM+GFLEI +++
Subjt:  NQGFNMSKRIYGPHDLVEHPMRVEHVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCNLDDMRGFLEILEDE

Query:  KMDFCTVLLRE
        K+DF T+LLRE
Subjt:  KMDFCTVLLRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGTTCGTCACATGCATCGAAGCATGTATGGACAAAGGAGGAGAAGGCCATACTAGTGGAGTGCTTGGTAGAACCAGGTTACTGGCCCAACTTGTCCGAAAGATG
GCGGCGAAGTTGCCTGGATACACATCCTACAGCAAAAGGCCTCCTCAACAAACTATGCCCCTATTACGACGAACTAGCCTATGTGTTTAGGAGAGATAGGGCGACGGGTC
GAGGTGCAGAGACTTTCGCCGACGTCAAGTCCAATGATCCTAACGGGTATGAGGGATTTCAACTGCATGATAGAAACGATATAGAGATCCCCACCATGTACAACCAGGGC
TTTAACATGTCCAAGAGGATATACGGGCCCCACGACTTGGTTGAGCATCCGATGCGTGTAGAGCATGTTGACCTCATTCATAAGGCGATGAAGTGTGCGAATGACCAACT
AAGGGCCATTGTTGAGTGGCCTTCTGTTGCGCTTCAGAATGAAACCACAGTTCGCCAGGAAGTCCTTTGCCAATTGCATGCGATCCCCGAACTAAGTAGGTTGGACATGG
TGCACTGCTCGCGAATCCTCTTTTGCAATTTAGACGACATGAGAGGTTTCCTTGAGATACTTGAGGACGAGAAGATGGACTTCTGCACGGTCCTTCTACGAGAACTCTTG
AATGTTCTTCTACTTCCACCGCCTGACTTCATGTTTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGTTCGTCACATGCATCGAAGCATGTATGGACAAAGGAGGAGAAGGCCATACTAGTGGAGTGCTTGGTAGAACCAGGTTACTGGCCCAACTTGTCCGAAAGATG
GCGGCGAAGTTGCCTGGATACACATCCTACAGCAAAAGGCCTCCTCAACAAACTATGCCCCTATTACGACGAACTAGCCTATGTGTTTAGGAGAGATAGGGCGACGGGTC
GAGGTGCAGAGACTTTCGCCGACGTCAAGTCCAATGATCCTAACGGGTATGAGGGATTTCAACTGCATGATAGAAACGATATAGAGATCCCCACCATGTACAACCAGGGC
TTTAACATGTCCAAGAGGATATACGGGCCCCACGACTTGGTTGAGCATCCGATGCGTGTAGAGCATGTTGACCTCATTCATAAGGCGATGAAGTGTGCGAATGACCAACT
AAGGGCCATTGTTGAGTGGCCTTCTGTTGCGCTTCAGAATGAAACCACAGTTCGCCAGGAAGTCCTTTGCCAATTGCATGCGATCCCCGAACTAAGTAGGTTGGACATGG
TGCACTGCTCGCGAATCCTCTTTTGCAATTTAGACGACATGAGAGGTTTCCTTGAGATACTTGAGGACGAGAAGATGGACTTCTGCACGGTCCTTCTACGAGAACTCTTG
AATGTTCTTCTACTTCCACCGCCTGACTTCATGTTTTTTTAG
Protein sequenceShow/hide protein sequence
MASSSHASKHVWTKEEKAILVECLVEPGYWPNLSERWRRSCLDTHPTAKGLLNKLCPYYDELAYVFRRDRATGRGAETFADVKSNDPNGYEGFQLHDRNDIEIPTMYNQG
FNMSKRIYGPHDLVEHPMRVEHVDLIHKAMKCANDQLRAIVEWPSVALQNETTVRQEVLCQLHAIPELSRLDMVHCSRILFCNLDDMRGFLEILEDEKMDFCTVLLRELL
NVLLLPPPDFMFF