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IVF0013216 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013216
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr03:19329677..19329961
RNA-Seq ExpressionIVF0013216
SyntenyIVF0013216
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006413 - translational initiation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031686.1 reverse transcriptase [Cucumis melo var. makuwa]3.81e-51100Show/hide
Query:  IQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDGH
        IQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDGH
Subjt:  IQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDGH

KAA0041960.1 reverse transcriptase [Cucumis melo var. makuwa]5.71e-3165.93Show/hide
Query:  TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG
        TV  +I +VL +Y D++   LPK+LP R+  DHE++LVP  KPP KNAY+MA PELAELRKQLD+LL   FIRPAK PYGA VLFQKKKDG
Subjt:  TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG

KAA0065444.1 reverse transcriptase [Cucumis melo var. makuwa]2.24e-3466.67Show/hide
Query:  MGTVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG
        +GTV  +I+KVLNEYVDI+ PEL ++LP R+  DH ++LVP  KPPTKNAY+MA PEL +LRKQLD+ LA  FI+PAK  YGA VLFQKKKDG
Subjt:  MGTVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG

TYK28653.1 reverse transcriptase [Cucumis melo var. makuwa]1.26e-3067.03Show/hide
Query:  TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG
        TVS +I +VL +Y D++   LPK+LP R+  DHE++LVP  KPP KNAY+MA PELAELRKQLD+LL   FIRPAK PYGA VLFQKKKDG
Subjt:  TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG

XP_022972954.1 uncharacterized protein LOC111471473 [Cucurbita maxima]1.45e-3068.13Show/hide
Query:  TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG
        TV  +I +VLN+Y DI+   LP+TLP RQ  DHE++L+P  KPP KNAYQMA PELAELRKQLD+LL   FIRP K PYGA VLFQKKKDG
Subjt:  TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG

TrEMBL top hitse value%identityAlignment
A0A5A7SNU7 Reverse transcriptase5.0e-42100Show/hide
Query:  IQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDGH
        IQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDGH
Subjt:  IQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDGH

A0A5A7VDT8 Reverse transcriptase2.3e-2666.67Show/hide
Query:  MGTVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG
        +GTV  +I+KVLNEYVDI+ PEL ++LP R+  DH ++LVP  KPPTKNAY+MA PEL +LRKQLD+ LA  FI+PAK  YGA VLFQKKKDG
Subjt:  MGTVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG

A0A6J1ID35 uncharacterized protein LOC1114714738.6e-2668.13Show/hide
Query:  TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG
        TV  +I +VLN+Y DI+   LP+TLP RQ  DHE++L+P  KPP KNAYQMA PELAELRKQLD+LL   FIRP K PYGA VLFQKKKDG
Subjt:  TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG

A0A6J1IEF9 uncharacterized protein LOC1114749451.5e-2567.03Show/hide
Query:  TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG
        TV  +I +VLN+Y DI+   LP+TLP R+  DHE++L+P  KPP KNAY+MA PELAELRKQLD+LL   FIRPAK PYGA VLFQKKKDG
Subjt:  TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG

A0A6J1IEY4 uncharacterized protein LOC1114757333.3e-2567.03Show/hide
Query:  TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG
        TV  +I +VLN+Y DI+   LP+TLP R+  DHE++L+P  KPP KNAY MA PELAELRKQLD+LL   FIRPAK PYGA VLFQKKKDG
Subjt:  TVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAACTGTCTCAACTAAGATCCAGAAAGTTTTGAATGAATATGTTGATATTATATCGCCCGAACTACCGAAGACATTGCCTCATCGACAGAGGAGTGATCACGAGGT
CAAACTTGTCCCATGGAATAAGCCTCCAACAAAGAATGCTTACCAGATGGCTCTACCTGAGTTAGCTGAGCTCAGGAAACAGTTGGATAAGTTATTGGCCACCACATTTA
TCAGGCCTGCAAAAGTGCCTTATGGAGCATCTGTGCTGTTTCAAAAGAAGAAAGATGGACACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAACTGTCTCAACTAAGATCCAGAAAGTTTTGAATGAATATGTTGATATTATATCGCCCGAACTACCGAAGACATTGCCTCATCGACAGAGGAGTGATCACGAGGT
CAAACTTGTCCCATGGAATAAGCCTCCAACAAAGAATGCTTACCAGATGGCTCTACCTGAGTTAGCTGAGCTCAGGAAACAGTTGGATAAGTTATTGGCCACCACATTTA
TCAGGCCTGCAAAAGTGCCTTATGGAGCATCTGTGCTGTTTCAAAAGAAGAAAGATGGACACTAG
Protein sequenceShow/hide protein sequence
MGTVSTKIQKVLNEYVDIISPELPKTLPHRQRSDHEVKLVPWNKPPTKNAYQMALPELAELRKQLDKLLATTFIRPAKVPYGASVLFQKKKDGH