CuGenDBv2

Gene ID	IVF0013225
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr05:21624014..21624511
RNA-Seq Expression	IVF0013225
Synteny	IVF0013225
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0042393 - histone binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0066028.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.08e-97

93.9

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Query:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI
        MASTRFEVSKFNGNGDFA+WRKKI AILVQHKVAKILDEGRL ENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGEL KKLES+YLTKSLPNKI
Subjt:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY
         IKEKFFGYKM QSKSLEENLDEFQKIVVDLNNIGEKMS+ENQAVILLN LPE YREVKAAIKY
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY

TYK04234.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.33e-95

88.41

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Query:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI
        MASTRFEVSKFNGN DFALWRK I  ILVQHKVAKILDE RL ENIT SEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLE++YLTKSLPNK+
Subjt:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY
         +KEKFFGYKMDQSK LEENLD+FQKI+VDLNNI E+MSDENQ VILLNSLPETYREVKA IKY
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY

TYK05815.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.88e-97

93.9

Show/hide

Query:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI
        MASTRFEVSKFNGNGDFA+WRKKI AILVQHKVAKILDEGRL ENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGEL KKLES+YLTKSLPNKI
Subjt:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY
         IKEKFFGYKM QSKSLEENLDEFQKIVVDLNNIGEKMS+ENQAVILLN LPE YREVKAAIKY
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY

TYK10340.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.81e-97

92.07

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Query:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI
        MASTR EVSKFNGNGDFALWRKKI AIL+QHKVAKILDE RL ENITESEKRDMDEM YSTILLYLSDEVLRLVDEATT GELWKKLES+YL KSL NKI
Subjt:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY
         IKEKFFGYKMDQSKSLEENLDEFQKI+VDLNNIGEKMSDENQAVILLNSLPE YREVKAAIKY
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY

TYK11792.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

8.72e-97

94.84

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Query:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI
        MASTRFEVSKFNG+GDFALWRKKI AILVQHKVAKILDE RL +NITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLES+YLTKSLPNKI
Subjt:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETY
         IKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQA ILLNSLPETY
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETY

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

5.0e-77

94.51

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Query:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI
        MASTRFEVSKFNG+GDFALWRKKI AILVQHKVAKILDE RL +NITESEKRDMDEMAY TILLYLSDEVLRLVDEATTTGELWKKLES+YLTKSLPNKI
Subjt:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY
         IKEKFFGYKMDQSK LEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY

A0A5A7UB25 Putative gag-pol polyprotein

5.0e-77

94.51

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Query:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI
        MASTRFEVSKFNG+GDF+LWRKKI AILVQHKVAKILDE RL +NITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLES+YLTKSL NKI
Subjt:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY
         IKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY

A0A5A7VE98 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.2e-76

93.9

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Query:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI
        MASTRFEVSKFNGNGDFA+WRKKI AILVQHKVAKILDEGRL ENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGEL KKLES+YLTKSLPNKI
Subjt:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY
         IKEKFFGYKM QSKSLEENLDEFQKIVVDLNNIGEKMS+ENQAVILLN LPE YREVKAAIKY
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY

A0A5D3C356 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.2e-76

93.9

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Query:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI
        MASTRFEVSKFNGNGDFA+WRKKI AILVQHKVAKILDEGRL ENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGEL KKLES+YLTKSLPNKI
Subjt:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY
         IKEKFFGYKM QSKSLEENLDEFQKIVVDLNNIGEKMS+ENQAVILLN LPE YREVKAAIKY
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY

A0A5D3DNU1 Putative gag-pol polyprotein

1.5e-78

95.73

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Query:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI
        MASTRFEVSKFNG+GDFALWRKKI AILVQHKVAKILDE RL +NITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLES+YLTKSLPNKI
Subjt:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY
         IKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKY

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

6.0e-11

25.77

Show/hide

Query:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI
        M   +  +  F+G   +A+W+ +I A+L +  V K++D   L+ N  +   +  +  A STI+ YLSD  L       T  ++ + L+++Y  KSL +++
Subjt:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKI

Query:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIK
        +++++    K+    SL  +   F +++ +L   G K+ + ++   LL +LP  Y  +  AI+
Subjt:  SIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.6e-24

34.15

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Query:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILD-EGRLLENITESEKRDMDEMAYSTILLYLSDEVL-RLVDEATTTGELWKKLESIYLTKSLPN
        M+  ++EV+KFNG+  F+ W++++  +L+Q  + K+LD + +  + +   +  D+DE A S I L+LSD+V+  ++DE T  G +W +LES+Y++K+L N
Subjt:  MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILD-EGRLLENITESEKRDMDEMAYSTILLYLSDEVL-RLVDEATTTGELWKKLESIYLTKSLPN

Query:  KISIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAI
        K+ +K++ +   M +  +   +L+ F  ++  L N+G K+ +E++A++LLNSLP +Y  +   I
Subjt:  KISIKEKFFGYKMDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAI

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCTTCGACACGATTTGAAGTGTCTAAGTTTAATGGGAATGGAGATTTCGCCCTTTGGAGAAAAAAGATTATAGCTATTTTGGTTCAACATAAAGTAGCAAAGATCTT
AGATGAAGGGAGACTTCTAGAAAATATTACAGAAAGTGAAAAAAGAGATATGGATGAAATGGCCTATTCAACTATTCTTCTGTATCTGTCAGATGAAGTTCTTAGGCTAG
TGGATGAGGCTACTACTACAGGGGAGTTGTGGAAAAAGCTAGAGAGCATCTACTTGACAAAGTCATTGCCAAATAAGATATCTATAAAAGAGAAGTTCTTTGGATATAAG
ATGGACCAAAGTAAAAGTTTAGAAGAGAATCTGGATGAATTTCAGAAGATTGTAGTTGATCTCAATAACATTGGTGAGAAGATGTCGGATGAGAATCAAGCAGTGATTCT
TTTAAATTCATTACCAGAAACATATCGGGAGGTTAAGGCTGCTATTAAATATGATTGA

mRNA sequence

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Protein sequence

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MASTRFEVSKFNGNGDFALWRKKIIAILVQHKVAKILDEGRLLENITESEKRDMDEMAYSTILLYLSDEVLRLVDEATTTGELWKKLESIYLTKSLPNKISIKEKFFGYK
MDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYD

IVF0013225 (gene) of Melon (IVF77) v1 genome