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IVF0013229 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013229
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297 family
Genome locationchr07:14795085..14796045
RNA-Seq ExpressionIVF0013229
SyntenyIVF0013229
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041704.1 uncharacterized protein E6C27_scaffold67G00370 [Cucumis melo var. makuwa]1.72e-5446.52Show/hide
Query:  MSIKSILRYAEFLKEFYTHKRKSRSQEKVMVSKNVYSLLKKNLLEKSVDP--------------------------------------------------
        M IKSI RYA+ LKE  THKR SRSQEKVMVSKNV SL+KKNL EK VDP                                                  
Subjt:  MSIKSILRYAEFLKEFYTHKRKSRSQEKVMVSKNVYSLLKKNLLEKSVDP--------------------------------------------------

Query:  -----------------------------------------------------------KSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIF
                                                                   +SL+T +EHD+FN+LI+Q TLEY++NEFAKNK SDDD SIF
Subjt:  -----------------------------------------------------------KSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIF

Query:  LDFVASVNDEHVLVDNIATN-EHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGINLTEIAFELNDEK
        LDF ASVNDEH LVDN+ATN  H LDNDFASSNEH LGRNINND+EHTLK IDIENDLG NL EIA +L+DEK
Subjt:  LDFVASVNDEHVLVDNIATN-EHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGINLTEIAFELNDEK

KAA0042324.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa]1.57e-4077.32Show/hide
Query:  KSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLDFVASVNDEHVLVDNIATNEHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIEND
        +SL+ L+EHD+FN+LI+QATLE+++NEFAKNKPSDDDLSIFLDFV SVNDE+VLVDNIATNEHV +NDF SSNEHD GRNI +D EH LK I IEND
Subjt:  KSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLDFVASVNDEHVLVDNIATNEHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIEND

KAA0050551.1 uncharacterized protein E6C27_scaffold673G00050 [Cucumis melo var. makuwa]1.64e-5545.13Show/hide
Query:  IKSILRYAEFLKEFYTHKRKSRSQEKVMVSKNVYSLLKKNLLEKSVD-----------------------------PKSL--------------------
        IK+I RYA+FLKE  THKR+SRSQEKVMVSKNV SL+KKNL EK VD                             P S+                    
Subjt:  IKSILRYAEFLKEFYTHKRKSRSQEKVMVSKNVYSLLKKNLLEKSVD-----------------------------PKSL--------------------

Query:  --------------------------------------------------------------------QTLQEHDRFNDLINQATLEYIDNEFAKNKPSD
                                                                            +T +EHD+FN+L +QATL++++ EFAKNKPS+
Subjt:  --------------------------------------------------------------------QTLQEHDRFNDLINQATLEYIDNEFAKNKPSD

Query:  DDLSIFLDFVASVNDEHVLVDNIATN-EHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGINLTEIAFELND
        DDLSIFLDFVASVNDEHVLVDN+ATN  HVLDNDFASSNEHDLGRNINNDDEHTLKGID ENDLG N+ EIA+E +D
Subjt:  DDLSIFLDFVASVNDEHVLVDNIATN-EHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGINLTEIAFELND

KAA0063162.1 hypothetical protein E6C27_scaffold381G00430 [Cucumis melo var. makuwa]5.76e-4580.61Show/hide
Query:  KSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLDFVASVNDEHVLVDNIATNE-HVLDNDFASSNEHDLGRNINNDDEHTLKGIDIEND
        +SL+TL++HD+F++LI+QATLEY++NEFAKNKPSDDD+SIFLDF ASVNDEHVLVDNIATNE HVLDNDFA SNEHDLGRNI +DDEH LK I IEND
Subjt:  KSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLDFVASVNDEHVLVDNIATNE-HVLDNDFASSNEHDLGRNINNDDEHTLKGIDIEND

KAA0066481.1 Retrotransposon gag protein [Cucumis melo var. makuwa]6.87e-8981.38Show/hide
Query:  MSIKSILRYAEFLKEFYTHKRKSRSQEK-------------VMVSKNVYSLLKKNLLEKSVDPKSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDD
        MSIKSILRYAEFLKEFYTHKRKS    +             V  S N  SL   + +E      SLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDD
Subjt:  MSIKSILRYAEFLKEFYTHKRKSRSQEK-------------VMVSKNVYSLLKKNLLEKSVDPKSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDD

Query:  LSIFLDFVASVNDEHVLVDNIATNEHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGINLTEIAFELNDEKILTTMVHVTNLL
        LSIFLDFVASVNDEHVLVDNIATNEHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGINLTEIAFELNDEKILTTMVHVTNLL
Subjt:  LSIFLDFVASVNDEHVLVDNIATNEHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGINLTEIAFELNDEKILTTMVHVTNLL

TrEMBL top hitse value%identityAlignment
A0A5A7TE46 Uncharacterized protein2.2e-4346.52Show/hide
Query:  MSIKSILRYAEFLKEFYTHKRKSRSQEKVMVSKNVYSLLKKNLLEKSVDP--------------------------------------------------
        M IKSI RYA+ LKE  THKR SRSQEKVMVSKNV SL+KKNL EK VDP                                                  
Subjt:  MSIKSILRYAEFLKEFYTHKRKSRSQEKVMVSKNVYSLLKKNLLEKSVDP--------------------------------------------------

Query:  -----------------------------------------------------------KSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIF
                                                                   +SL+T +EHD+FN+LI+Q TLEY++NEFAKNK SDDD SIF
Subjt:  -----------------------------------------------------------KSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIF

Query:  LDFVASVNDEHVLVDNIATN-EHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGINLTEIAFELNDEK
        LDF ASVNDEH LVDN+ATN  H LDNDFASSNEH LGRNINND+EHTLK IDIENDLG NL EIA +L+DEK
Subjt:  LDFVASVNDEHVLVDNIATN-EHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGINLTEIAFELNDEK

A0A5A7V4I7 Uncharacterized protein6.5e-3580.61Show/hide
Query:  KSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLDFVASVNDEHVLVDNIATNE-HVLDNDFASSNEHDLGRNINNDDEHTLKGIDIEND
        +SL+TL++HD+F++LI+QATLEY++NEFAKNKPSDDD+SIFLDF ASVNDEHVLVDNIATNE HVLDNDFA SNEHDLGRNI +DDEH LK I IEND
Subjt:  KSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLDFVASVNDEHVLVDNIATNE-HVLDNDFASSNEHDLGRNINNDDEHTLKGIDIEND

A0A5D3CW21 Retrovirus-related Pol polyprotein from transposon 297 family4.7e-3377.32Show/hide
Query:  KSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLDFVASVNDEHVLVDNIATNEHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIEND
        +SL+ L+EHD+FN+LI+QATLE+++NEFAKNKPSDDDLSIFLDFV SVNDE+VLVDNIATNEHV +NDF SSNEHD GRNI +D EH LK I IEND
Subjt:  KSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLDFVASVNDEHVLVDNIATNEHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIEND

A0A5D3D5G7 Uncharacterized protein1.0e-4345.13Show/hide
Query:  IKSILRYAEFLKEFYTHKRKSRSQEKVMVSKNVYSLLKKNLLEKSVD-----------------------------PKSL--------------------
        IK+I RYA+FLKE  THKR+SRSQEKVMVSKNV SL+KKNL EK VD                             P S+                    
Subjt:  IKSILRYAEFLKEFYTHKRKSRSQEKVMVSKNVYSLLKKNLLEKSVD-----------------------------PKSL--------------------

Query:  --------------------------------------------------------------------QTLQEHDRFNDLINQATLEYIDNEFAKNKPSD
                                                                            +T +EHD+FN+L +QATL++++ EFAKNKPS+
Subjt:  --------------------------------------------------------------------QTLQEHDRFNDLINQATLEYIDNEFAKNKPSD

Query:  DDLSIFLDFVASVNDEHVLVDNIATN-EHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGINLTEIAFELND
        DDLSIFLDFVASVNDEHVLVDN+ATN  HVLDNDFASSNEHDLGRNINNDDEHTLKGID ENDLG N+ EIA+E +D
Subjt:  DDLSIFLDFVASVNDEHVLVDNIATN-EHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGINLTEIAFELND

A0A5D3DU65 Retrotransposon gag protein2.4e-6982.97Show/hide
Query:  MSIKSILRYAEFLKEFYTHKRKSRSQ---EKVMVSKNVYSLLKKNLLEKSV----DPKSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLD
        MSIKSILRYAEFLKEFYTHKRKS      +  +V  N++  +K +    S+      +SLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLD
Subjt:  MSIKSILRYAEFLKEFYTHKRKSRSQ---EKVMVSKNVYSLLKKNLLEKSV----DPKSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLD

Query:  FVASVNDEHVLVDNIATNEHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGINLTEIAFELNDEKILTTMVHVTNLL
        FVASVNDEHVLVDNIATNEHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGINLTEIAFELNDEKILTTMVHVTNLL
Subjt:  FVASVNDEHVLVDNIATNEHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGINLTEIAFELNDEKILTTMVHVTNLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAATCAAGAGCATACTAAGGTACGCAGAGTTTCTTAAAGAGTTTTATACTCACAAGAGGAAAAGTAGGAGCCAAGAAAAAGTAATGGTTAGTAAAAACGTGTATTC
ACTTTTAAAGAAGAATCTTCTAGAAAAAAGTGTCGATCCAAAATCATTACAAACACTACAAGAGCATGATAGATTCAATGATCTTATTAATCAAGCAACTTTAGAATATA
TTGACAATGAATTTGCTAAGAACAAACCTAGTGATGATGATCTCTCTATCTTCCTTGACTTTGTTGCTAGTGTAAATGATGAGCATGTCTTGGTTGATAATATTGCAACA
AATGAACATGTTCTAGATAATGATTTTGCATCTAGTAATGAGCATGATCTAGGAAGAAACATTAATAATGATGATGAGCATACCTTGAAAGGCATTGACATTGAAAATGA
TCTTGGCATAAACCTTACTGAAATTGCTTTTGAACTTAATGATGAGAAAATATTGACGACAATGGTGCATGTGACAAACCTACTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAATCAAGAGCATACTAAGGTACGCAGAGTTTCTTAAAGAGTTTTATACTCACAAGAGGAAAAGTAGGAGCCAAGAAAAAGTAATGGTTAGTAAAAACGTGTATTC
ACTTTTAAAGAAGAATCTTCTAGAAAAAAGTGTCGATCCAAAATCATTACAAACACTACAAGAGCATGATAGATTCAATGATCTTATTAATCAAGCAACTTTAGAATATA
TTGACAATGAATTTGCTAAGAACAAACCTAGTGATGATGATCTCTCTATCTTCCTTGACTTTGTTGCTAGTGTAAATGATGAGCATGTCTTGGTTGATAATATTGCAACA
AATGAACATGTTCTAGATAATGATTTTGCATCTAGTAATGAGCATGATCTAGGAAGAAACATTAATAATGATGATGAGCATACCTTGAAAGGCATTGACATTGAAAATGA
TCTTGGCATAAACCTTACTGAAATTGCTTTTGAACTTAATGATGAGAAAATATTGACGACAATGGTGCATGTGACAAACCTACTTTAG
Protein sequenceShow/hide protein sequence
MSIKSILRYAEFLKEFYTHKRKSRSQEKVMVSKNVYSLLKKNLLEKSVDPKSLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLDFVASVNDEHVLVDNIAT
NEHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIENDLGINLTEIAFELNDEKILTTMVHVTNLL