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IVF0013270 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013270
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr12:14251852..14252229
RNA-Seq ExpressionIVF0013270
SyntenyIVF0013270
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33917.1 hypothetical protein [Cucumis melo subsp. melo]4.12e-2972.09Show/hide
Query:  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLS
        +GLNMSPDEF+ SR  R GDGRNASSRSKRKR  + +E  NIIQN MEYAN QLN I +WPILRNQ+AS TQ+EVVRQLQAI +L+
Subjt:  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLS

KAA0038998.1 retrotransposon protein [Cucumis melo var. makuwa]3.34e-2273.97Show/hide
Query:  IKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRN
        ++I TMFSQGLN S DEFVASR   LGD RNASS  KRK+    VETTNIIQNVMEYAN QLN I NWPILRN
Subjt:  IKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRN

KAA0042367.1 retrotransposon protein [Cucumis melo var. makuwa]4.84e-77100Show/hide
Query:  MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQE
        MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQE
Subjt:  MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQE

Query:  EVVRQLQAILKLSRIEVLLYAYLYA
        EVVRQLQAILKLSRIEVLLYAYLYA
Subjt:  EVVRQLQAILKLSRIEVLLYAYLYA

KAA0060635.1 retrotransposon protein [Cucumis melo var. makuwa]3.65e-2670.93Show/hide
Query:  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLS
        +GLNMSPDEF+ SR  R GDGRNASSR KRKR  + +ET NIIQN MEYAN QLN I +W ILRNQ+AS TQ+EVVRQLQAI +L+
Subjt:  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLS

TYK02236.1 retrotransposon protein [Cucumis melo var. makuwa]1.32e-2770.93Show/hide
Query:  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLS
        +GLNMSPDEF+ SR  R GDGRNASSR KRKR  + +ET NIIQN MEYAN QLN I +W ILRNQ+AS TQ+EVVRQLQAI +L+
Subjt:  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLS

TrEMBL top hitse value%identityAlignment
A0A5A7TKY0 Retrotransposon protein4.6e-59100Show/hide
Query:  MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQE
        MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQE
Subjt:  MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQE

Query:  EVVRQLQAILKLSRIEVLLYAYLYA
        EVVRQLQAILKLSRIEVLLYAYLYA
Subjt:  EVVRQLQAILKLSRIEVLLYAYLYA

A0A5A7V442 Retrotransposon protein1.3e-2170.93Show/hide
Query:  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLS
        +GLNMSPDEF+ SR  R GDGRNASSR KRKR  + +ET NIIQN MEYAN QLN I +W ILRNQ+AS TQ+EVVRQLQAI +L+
Subjt:  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLS

A0A5D3BC43 Retrotransposon protein2.0e-1749.46Show/hide
Query:  TMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIE
        +M+SQGLNMSPD+ + +R  R+ + RN SSRSKRKR    +++ NI++  +EY N QLN+IA WP+L+ Q+AS T++E++RQL+AI +L+ ++
Subjt:  TMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIE

A0A5D3BVH6 Retrotransposon protein1.3e-2170.93Show/hide
Query:  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLS
        +GLNMSPDEF+ SR  R GDGRNASSR KRKR  + +ET NIIQN MEYAN QLN I +W ILRNQ+AS TQ+EVVRQLQAI +L+
Subjt:  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLS

E5GBS5 Uncharacterized protein9.1e-2372.09Show/hide
Query:  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLS
        +GLNMSPDEF+ SR  R GDGRNASSRSKRKR  + +E  NIIQN MEYAN QLN I +WPILRNQ+AS TQ+EVVRQLQAI +L+
Subjt:  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGGTCGAATGTCCCTTTTGGGTACGAGGGATTTGCCGCTGGCAATGAAAATGATAAAGATCCTTACTATGTTTAGTCAAGGACTAAACATGTCGCCTGATGAATT
TGTGGCCAGTCGACATGAGCGGTTAGGTGACGGTAGAAATGCTTCAAGTAGGTCAAAGAGGAAGAGGAGAAGTCAGCCTGTAGAGACCACGAACATAATTCAAAATGTCA
TGGAGTACGCCAATAGCCAGCTCAACTACATTGCAAATTGGCCGATCTTAAGGAATCAAAATGCAAGCGCAACACAGGAGGAGGTCGTTCGACAATTACAGGCCATCCTT
AAACTTAGTAGAATTGAGGTGTTGCTGTATGCGTATCTTTATGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGGTCGAATGTCCCTTTTGGGTACGAGGGATTTGCCGCTGGCAATGAAAATGATAAAGATCCTTACTATGTTTAGTCAAGGACTAAACATGTCGCCTGATGAATT
TGTGGCCAGTCGACATGAGCGGTTAGGTGACGGTAGAAATGCTTCAAGTAGGTCAAAGAGGAAGAGGAGAAGTCAGCCTGTAGAGACCACGAACATAATTCAAAATGTCA
TGGAGTACGCCAATAGCCAGCTCAACTACATTGCAAATTGGCCGATCTTAAGGAATCAAAATGCAAGCGCAACACAGGAGGAGGTCGTTCGACAATTACAGGCCATCCTT
AAACTTAGTAGAATTGAGGTGTTGCTGTATGCGTATCTTTATGCATAA
Protein sequenceShow/hide protein sequence
MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAIL
KLSRIEVLLYAYLYA