; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0013365 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013365
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr02:13480093..13480398
RNA-Seq ExpressionIVF0013365
SyntenyIVF0013365
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041727.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.86e-3056.91Show/hide
Query:  CCSRDGRHLKYVTTEKIIVLNMLQSRR----------------------------ASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAIII
        CC+R+  H KYV  EKI+V NMLQ RR                            ASSSF HMCCSRGDQHLH +A QAIIIFNATQAIIIF+   AIII
Subjt:  CCSRDGRHLKYVTTEKIIVLNMLQSRR----------------------------ASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAIII

Query:  FNVEQRRRSSSSMQRNANDHHFQ
        FNVE  R+SSSSMQR+A D H Q
Subjt:  FNVEQRRRSSSSMQRNANDHHFQ

KAA0050143.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.12e-5593.27Show/hide
Query:  QICCS-------RDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAIIIFNVEQRRRSSSSMQRNAND
        QICCS       RDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAIIIFNVEQRRRSSSSMQRNAND
Subjt:  QICCS-------RDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAIIIFNVEQRRRSSSSMQRNAND

Query:  HHFQ
        HHFQ
Subjt:  HHFQ

KAA0059585.1 uncharacterized protein E6C27_scaffold54G00040 [Cucumis melo var. makuwa]5.50e-1146.88Show/hide
Query:  QICCSRDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAIIIFNVEQRRRSSSSMQRNANDHHF
        QICCS++GR L YV  EK+ V NMLQ RR   S+  +CCSR  + L + A +AI IF     I IF   R  +  ++ QRRRSSSS + + +DHH 
Subjt:  QICCSRDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAIIIFNVEQRRRSSSSMQRNANDHHF

KAA0060518.1 hypothetical protein E6C27_scaffold22G003700 [Cucumis melo var. makuwa]5.93e-1759.3Show/hide
Query:  SRDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNAT---------QAIIIFN-AARAIIIFNVEQR
        S++GRHLKYV  EK+ V NMLQ RR+SS    +CC+RG+QHLH H AQAIIIF A          QAIIIFN AA  IIIF V Q+
Subjt:  SRDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNAT---------QAIIIFN-AARAIIIFNVEQR

KAA0066592.1 hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa]9.44e-1253.85Show/hide
Query:  SLFQICCSRDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQA
        S FQICCSR+GR LKYV  EKI+V NMLQSR +SS   H+CCS+  + L + A + +I+ N  Q+
Subjt:  SLFQICCSRDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQA

TrEMBL top hitse value%identityAlignment
A0A5A7TJ64 Retrotransposon gag protein2.3e-2456.45Show/hide
Query:  ICCSRDGRHLKYVTTEKIIVLNM----------------------------LQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAII
        +CC+R+  H KYV  EKI+V NM                            LQ RRASSSF HMCCSRGDQHLH +A QAIIIFNATQAIIIF+   AII
Subjt:  ICCSRDGRHLKYVTTEKIIVLNM----------------------------LQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAII

Query:  IFNVEQRRRSSSSMQRNANDHHFQ
        IFNVE  R+SSSSMQR+A D H Q
Subjt:  IFNVEQRRRSSSSMQRNANDHHFQ

A0A5A7U2K7 Retrotransposon gag protein3.4e-4493.27Show/hide
Query:  QICCS-------RDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAIIIFNVEQRRRSSSSMQRNAND
        QICCS       RDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAIIIFNVEQRRRSSSSMQRNAND
Subjt:  QICCS-------RDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAIIIFNVEQRRRSSSSMQRNAND

Query:  HHFQ
        HHFQ
Subjt:  HHFQ

A0A5A7V172 Uncharacterized protein1.0e-0847.37Show/hide
Query:  QICCSRDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAIIIFNVEQRRRSSSSMQRNANDHH
        QICCS++GR L YV  EK+ V NMLQ RR   S+  +CCSR  + L + A +AI IF     I IF   R  +  ++ QRRRSSSS + + +DHH
Subjt:  QICCSRDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAIIIFNVEQRRRSSSSMQRNANDHH

A0A5A7VE10 Uncharacterized protein6.7e-0841Show/hide
Query:  SLFQICCSRDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAIIIFNVEQRRRSSSSMQRNANDHHFQ
        S FQICCSR+GR LKYV  EKI+V NMLQSR +SS   H+CCS+  + L + A + +I+ N  Q+ I    + + I  + E RR   ++++++   +  Q
Subjt:  SLFQICCSRDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAIIIFNVEQRRRSSSSMQRNANDHHFQ

A0A5D3BNW3 Uncharacterized protein3.1e-1359.3Show/hide
Query:  SRDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNA---------TQAIIIF-NAARAIIIFNVEQR
        S++GRHLKYV  EK+ V NMLQ RR+SS    +CC+RG+QHLH H AQAIIIF A          QAIIIF NAA  IIIF V Q+
Subjt:  SRDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNA---------TQAIIIF-NAARAIIIFNVEQR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTATTTCAAATATGTTGTAGCCGAGACGGTCGTCATCTCAAATATGTTACAACAGAAAAGATCATCGTCTTAAATATGTTGCAATCGAGAAGAGCATCATCTTC
ATTTCCTCACATGTGTTGTAGCCGAGGCGATCAACATCTTCATCATCATGCGGCGCAAGCAATCATCATCTTCAATGCGACACAGGCGATCATCATCTTTAATGCGGCAC
GCGCGATCATCATCTTCAATGTAGAACAACGTAGGCGATCATCATCTTCAATGCAACGCAACGCAAACGATCATCATTTTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTATTTCAAATATGTTGTAGCCGAGACGGTCGTCATCTCAAATATGTTACAACAGAAAAGATCATCGTCTTAAATATGTTGCAATCGAGAAGAGCATCATCTTC
ATTTCCTCACATGTGTTGTAGCCGAGGCGATCAACATCTTCATCATCATGCGGCGCAAGCAATCATCATCTTCAATGCGACACAGGCGATCATCATCTTTAATGCGGCAC
GCGCGATCATCATCTTCAATGTAGAACAACGTAGGCGATCATCATCTTCAATGCAACGCAACGCAAACGATCATCATTTTCAATAA
Protein sequenceShow/hide protein sequence
MSLFQICCSRDGRHLKYVTTEKIIVLNMLQSRRASSSFPHMCCSRGDQHLHHHAAQAIIIFNATQAIIIFNAARAIIIFNVEQRRRSSSSMQRNANDHHFQ