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IVF0013370 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013370
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr07:5894475..5894894
RNA-Seq ExpressionIVF0013370
SyntenyIVF0013370
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038094.1 retrotransposon protein [Cucumis melo var. makuwa]2.93e-5769.57Show/hide
Query:  MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRE
        ++SHPA KRL NK F YY +LAYVFDHD +T   FV+TF  VGSNEP EY+GFDM  GN++F S+Y+QG D+SQ+ VR  RP RTSDGRVGLS SKRKR 
Subjt:  MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRE

Query:  SQQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHV
        SQ++ ELEVI+M +ECTNDQLRMI EWPA ALANDTHV
Subjt:  SQQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHV

KAA0050190.1 retrotransposon protein [Cucumis melo var. makuwa]4.61e-6275.18Show/hide
Query:  SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQ
        SHPA K L NKPF YY +LAYVF  D R MD FV+TF  VGSN+PVEY+ FDM  GN++FPSMYSQGID+SQE VR SRP+ TS GR+  SGSKRKRESQ
Subjt:  SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQ

Query:  QKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR
        QKGE+EVIHMA+ECTNDQLR I EWPARALANDTHVR
Subjt:  QKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR

KAA0052279.1 pol protein [Cucumis melo var. makuwa]4.22e-8499.28Show/hide
Query:  QSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRES
        +SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRES
Subjt:  QSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRES

Query:  QQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR
        QQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR
Subjt:  QQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR

KAA0065782.1 retrotransposon protein [Cucumis melo var. makuwa]3.68e-5466.42Show/hide
Query:  SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQ
        SHP  K LLNK F +Y +L YVF  D R    F ETF  VGSNEP+ YEGFD+P GNK+FPS+Y+QGI++SQE VR S+P+R  +GRVG SGSKRKR SQ
Subjt:  SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQ

Query:  QKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR
        Q+ ELEVI+MA ECTNDQL+++ EWPARALAND HVR
Subjt:  QKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR

TYK20513.1 retrotransposon protein [Cucumis melo var. makuwa]1.68e-5668.84Show/hide
Query:  MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRE
        ++SHPA KRL NK F YY +LAYVFDHD +T   FV+TF  VGSNEP EY+GFDM  GN++F S+Y+QG D+SQ+ VR  RP  TSDGRVGLS SKRKR 
Subjt:  MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRE

Query:  SQQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHV
        SQ++ ELEVI+M +ECTNDQLRMI EWPA ALANDTHV
Subjt:  SQQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHV

TrEMBL top hitse value%identityAlignment
A0A5A7T3Q2 Retrotransposon protein5.5e-4569.57Show/hide
Query:  MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRE
        ++SHPA KRL NK F YY +LAYVFDH D+T   FV+TF  VGSNEP EY+GFDM  GN++F S+Y+QG D+SQ+ VR  RP RTSDGRVGLS SKRKR 
Subjt:  MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRE

Query:  SQQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHV
        SQ++ ELEVI+M +ECTNDQLRMI EWPA ALANDTHV
Subjt:  SQQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHV

A0A5A7U4I8 Retrotransposon protein1.4e-4875.18Show/hide
Query:  SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQ
        SHPA K L NKPF YY +LAYVF   DR MD FV+TF  VGSN+PVEY+ FDM  GN++FPSMYSQGID+SQE VR SRP+ TS GR+  SGSKRKRESQ
Subjt:  SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQ

Query:  QKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR
        QKGE+EVIHMA+ECTNDQLR I EWPARALANDTHVR
Subjt:  QKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR

A0A5A7UFM7 Pol protein1.4e-7299.28Show/hide
Query:  QSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRES
        +SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRES
Subjt:  QSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRES

Query:  QQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR
        QQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR
Subjt:  QQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR

A0A5D3BD15 Retrotransposon protein8.8e-4366.42Show/hide
Query:  SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQ
        SHP  K LLNK F +Y +L YVF   DR    F ETF  VGSNEP+ YEGFD+P GNK+FPS+Y+QGI++SQE VR S+P+R  +GRVG SGSKRKR SQ
Subjt:  SHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQ

Query:  QKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR
        Q+ ELEVI+MA ECTNDQL+++ EWPARALAND HVR
Subjt:  QKGELEVIHMAVECTNDQLRMIVEWPARALANDTHVR

A0A5D3DAC5 Retrotransposon protein2.1e-4468.84Show/hide
Query:  MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRE
        ++SHPA KRL NK F YY +LAYVFDH D+T   FV+TF  VGSNEP EY+GFDM  GN++F S+Y+QG D+SQ+ VR  RP  TSDGRVGLS SKRKR 
Subjt:  MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRE

Query:  SQQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHV
        SQ++ ELEVI+M +ECTNDQLRMI EWPA ALANDTHV
Subjt:  SQQKGELEVIHMAVECTNDQLRMIVEWPARALANDTHV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCGCATCCTGCAGGGAAACGGCTCCTTAACAAGCCCTTTCTCTATTACGTTAAACTTGCATATGTGTTCGATCACGACGATAGGACGATGGATCTCTTTGTTGA
GACATTCGCTATCGTCGGGTCTAACGAGCCTGTCGAGTATGAGGGGTTTGACATGCCGGTTGGGAACAAGAAGTTCCCATCTATGTACAGCCAGGGGATTGACATATCCC
AGGAGTATGTACGCACATCACGACCTACTCGCACGTCAGACGGTAGGGTCGGATTAAGTGGATCAAAGAGAAAGAGGGAAAGCCAGCAGAAGGGTGAGCTTGAAGTCATA
CATATGGCCGTCGAGTGTACGAATGACCAACTAAGGATGATTGTCGAGTGGCCTGCACGCGCCCTTGCCAATGACACCCATGTGCGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCGCATCCTGCAGGGAAACGGCTCCTTAACAAGCCCTTTCTCTATTACGTTAAACTTGCATATGTGTTCGATCACGACGATAGGACGATGGATCTCTTTGTTGA
GACATTCGCTATCGTCGGGTCTAACGAGCCTGTCGAGTATGAGGGGTTTGACATGCCGGTTGGGAACAAGAAGTTCCCATCTATGTACAGCCAGGGGATTGACATATCCC
AGGAGTATGTACGCACATCACGACCTACTCGCACGTCAGACGGTAGGGTCGGATTAAGTGGATCAAAGAGAAAGAGGGAAAGCCAGCAGAAGGGTGAGCTTGAAGTCATA
CATATGGCCGTCGAGTGTACGAATGACCAACTAAGGATGATTGTCGAGTGGCCTGCACGCGCCCTTGCCAATGACACCCATGTGCGCTAG
Protein sequenceShow/hide protein sequence
MQSHPAGKRLLNKPFLYYVKLAYVFDHDDRTMDLFVETFAIVGSNEPVEYEGFDMPVGNKKFPSMYSQGIDISQEYVRTSRPTRTSDGRVGLSGSKRKRESQQKGELEVI
HMAVECTNDQLRMIVEWPARALANDTHVR