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IVF0013389 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013389
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr01:12791666..12792118
RNA-Seq ExpressionIVF0013389
SyntenyIVF0013389
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047893.1 retrotransposon protein [Cucumis melo var. makuwa]3.77e-5160.26Show/hide
Query:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIG-YEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGE
        ++SHPA K L NKPF YYDEL YVFG  +  G F ETF DVGSNEP G Y+ FDM  GNEDF    ++G+   +    H DLLA QRVG D+VDRRGRGE
Subjt:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIG-YEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGE

Query:  ASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN
         +E +S K +IW  + +T+NSGRLRSG HA L MTT C+RN  AYCVRCQN
Subjt:  ASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN

KAA0048405.1 retrotransposon protein [Cucumis melo var. makuwa]9.24e-5664.24Show/hide
Query:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIG-YEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGE
        ++SHPA KGL NKPF YYDEL YVFG  + TG F ETF DVGSNEP G Y+ FDM    +     TAR LT  R MY H DLLA QRVGSD+VDRRGRGE
Subjt:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIG-YEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGE

Query:  ASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN
         SE +S K +IW  + +T+NSGRLRSG HA L MTT C+RN  AYCVRCQN
Subjt:  ASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN

KAA0053666.1 retrotransposon protein [Cucumis melo var. makuwa]8.48e-5766.23Show/hide
Query:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIG-YEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGE
        ++SHPA KGL NKPF YYDEL YVFG  + TG F ETF DVGSNEP G Y+ FDM  GNEDFP  TAR LT  R MY H DLLA QRVG D+VDRR RGE
Subjt:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIG-YEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGE

Query:  ASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN
         SE +S K +IW  + +T+NSGRLRSG HA L +TT C+RN  AYCVRCQN
Subjt:  ASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN

KAA0056563.1 retrotransposon protein [Cucumis melo var. makuwa]3.37e-5262.5Show/hide
Query:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIGYEGFDMPSGNEDFPSS--TARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRG
        ++SHPA KGL NKPF YYDEL YVFG  + TG F ETF DVGSNEP+  +  D+  G E   S   TAR LT  R MY H DLLA QRVG D+VDRRGRG
Subjt:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIGYEGFDMPSGNEDFPSS--TARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRG

Query:  EASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN
        E SE +S K +IW  + +T+NSGRLRSG HA L MTT C+RN  AYCVRCQN
Subjt:  EASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN

TYK23166.1 retrotransposon protein [Cucumis melo var. makuwa]8.32e-10798.67Show/hide
Query:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIGYEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGEA
        ++SHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIGYEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGEA
Subjt:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIGYEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGEA

Query:  SERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN
        SERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN
Subjt:  SERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN

TrEMBL top hitse value%identityAlignment
A0A5A7TWD3 Retrotransposon protein1.5e-4060.26Show/hide
Query:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEP-IGYEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGE
        ++SHPA K L NKPF YYDEL YVFG  +  G F ETF DVGSNEP  GY+ FDM  GNEDF    ++G+   +    H DLLA QRVG D+VDRRGRGE
Subjt:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEP-IGYEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGE

Query:  ASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN
         +E +S K +IW  + +T+NSGRLRSG HA L MTT C+RN  AYCVRCQN
Subjt:  ASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN

A0A5A7U437 Retrotransposon protein1.7e-4464.24Show/hide
Query:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEP-IGYEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGE
        ++SHPA KGL NKPF YYDEL YVFG  + TG F ETF DVGSNEP  GY+ FDM    +     TAR LT  R MY H DLLA QRVGSD+VDRRGRGE
Subjt:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEP-IGYEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGE

Query:  ASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN
         SE +S K +IW  + +T+NSGRLRSG HA L MTT C+RN  AYCVRCQN
Subjt:  ASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN

A0A5A7UHF7 Retrotransposon protein2.9e-4766.23Show/hide
Query:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEP-IGYEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGE
        ++SHPA KGL NKPF YYDEL YVFG  + TG F ETF DVGSNEP  GY+ FDM  GNEDFP  TAR LT  R MY H DLLA QRVG D+VDRR RGE
Subjt:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEP-IGYEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGE

Query:  ASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN
         SE +S K +IW  + +T+NSGRLRSG HA L +TT C+RN  AYCVRCQN
Subjt:  ASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN

A0A5A7UL03 Retrotransposon protein1.1e-4162.5Show/hide
Query:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIGYEGFDMPSGNEDFPS--STARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRG
        ++SHPA KGL NKPF YYDEL YVFG  + TG F ETF DVGSNEP+  +  D+  G E   S   TAR LT  R MY H DLLA QRVG D+VDRRGRG
Subjt:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIGYEGFDMPSGNEDFPS--STARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRG

Query:  EASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN
        E SE +S K +IW  + +T+NSGRLRSG HA L MTT C+RN  AYCVRCQN
Subjt:  EASERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN

A0A5D3DHQ9 Retrotransposon protein9.4e-8398.67Show/hide
Query:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIGYEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGEA
        ++SHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIGYEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGEA
Subjt:  MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIGYEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGEA

Query:  SERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN
        SERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN
Subjt:  SERASFKSHIWFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCACATCCTGCAGTGAAAGGACTCTTTAATAAACCCTTTTCCTATTACGACGAACTTGCATATGTGTTCGGATGCTATAAGGTGACGGGTCACTTCGTTGAGAC
ATTCGTCGATGTCGGGTCTAACGAGCCTATCGGGTATGAGGGGTTTGACATGCCGAGTGGGAACGAGGATTTTCCATCCAGTACAGCCAGGGGATTGACATGTCCCAGGA
GGATGTACACACATCACGACCTTCTCGCACATCAGAGGGTAGGATCGGATCGAGTGGATCGAAGAGGAAGAGGGGAAGCTAGCGAAAGGGCGAGCTTCAAGTCACACATA
TGGTTCTTGAGTGTACGAACGACCAACTCAGGACGATTGCGGAGTGGCCTGCATGCGCCCTTGCTAATGACAACCATGTGCTCTAGGAATTCTTATGCATATTGTGTGAG
ATGTCAGAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCACATCCTGCAGTGAAAGGACTCTTTAATAAACCCTTTTCCTATTACGACGAACTTGCATATGTGTTCGGATGCTATAAGGTGACGGGTCACTTCGTTGAGAC
ATTCGTCGATGTCGGGTCTAACGAGCCTATCGGGTATGAGGGGTTTGACATGCCGAGTGGGAACGAGGATTTTCCATCCAGTACAGCCAGGGGATTGACATGTCCCAGGA
GGATGTACACACATCACGACCTTCTCGCACATCAGAGGGTAGGATCGGATCGAGTGGATCGAAGAGGAAGAGGGGAAGCTAGCGAAAGGGCGAGCTTCAAGTCACACATA
TGGTTCTTGAGTGTACGAACGACCAACTCAGGACGATTGCGGAGTGGCCTGCATGCGCCCTTGCTAATGACAACCATGTGCTCTAGGAATTCTTATGCATATTGTGTGAG
ATGTCAGAACTAA
Protein sequenceShow/hide protein sequence
MQSHPAVKGLFNKPFSYYDELAYVFGCYKVTGHFVETFVDVGSNEPIGYEGFDMPSGNEDFPSSTARGLTCPRRMYTHHDLLAHQRVGSDRVDRRGRGEASERASFKSHI
WFLSVRTTNSGRLRSGLHAPLLMTTMCSRNSYAYCVRCQN