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IVF0013445 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013445
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr11:18829132..18829533
RNA-Seq ExpressionIVF0013445
SyntenyIVF0013445
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037172.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.19e-4076.6Show/hide
Query:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQ
        MLPTSG+R   VRNHWKC CSEGNGLS RTSG RPKKT+ARMP T+FS PGV+S P TVSSLCFVL ISL IF   TLRTSTH  GMLPD FSQ
Subjt:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQ

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]3.66e-5873.68Show/hide
Query:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQVIGREV
        M PT+G+RSSGVRNHWKCTCSEGNGL+ RTSG  PKKT+ARMPR++FS  G +S   TVSSLCFVLVI+L IF   T RTSTH TGMLPDMFS+ IG+E 
Subjt:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQVIGREV

Query:  SSLEGELWCDPKRSKRWRMLPTSGKLSSGVRNN
        SSLEGELWC+PKRSKRW MLPTS + SSG+RN+
Subjt:  SSLEGELWCDPKRSKRWRMLPTSGKLSSGVRNN

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]2.81e-4852.94Show/hide
Query:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQV-----
        MLPTSG+RSSGVRN WKCTC EGNGLS RTSG RPKKT+ARMP+T+FS PG +S P TVS+LC VLV SL IFG  T RTSTH  GMLPD FS+      
Subjt:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQV-----

Query:  -------------------------------------------------IGREVSSLEGELWCDPKRSKRWRMLPTSGKLSSGVRNN
                                                         IGRE SSLEGEL CDPK SKRW MLPT G+ SSG RN+
Subjt:  -------------------------------------------------IGREVSSLEGELWCDPKRSKRWRMLPTSGKLSSGVRNN

TYK23423.1 DUF4283 domain-containing protein [Cucumis melo var. makuwa]6.84e-3460.83Show/hide
Query:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQ------
        MLPTS +R SGVRNHWK TCSEGNGL+ RTS VR KKT+ARMP+T  S PG +S P  VSSLCFVLVISL IFG  T R STH +GML  MF        
Subjt:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQ------

Query:  ----VIGREVSSLEGELWCD
            +  +  S L GELWCD
Subjt:  ----VIGREVSSLEGELWCD

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]9.03e-4263.91Show/hide
Query:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQVIGREV
        MLPTSG+RSSGVRNHWKCTCSEGN LS RT G  PKKT AR P+ +FS  GV+S   TVSSL  + +I LL+FG      STH   ML    S  IGRE 
Subjt:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQVIGREV

Query:  SSLEGELWCDPKRSKRWRMLPTSGKLSSGVRNN
        SSLE ELWCDPKRSK W ML TSG  SS VRN+
Subjt:  SSLEGELWCDPKRSKRWRMLPTSGKLSSGVRNN

TrEMBL top hitse value%identityAlignment
A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein7.9e-4973.68Show/hide
Query:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQVIGREV
        M PT+G+RSSGVRNHWKCTCSEGNGL+ RTSG  PKKT+ARMPR++FS  G +S   TVSSLCFVLVI+L IF   T RTSTH TGMLPDMFS+ IG+E 
Subjt:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQVIGREV

Query:  SSLEGELWCDPKRSKRWRMLPTSGKLSSGVRNN
        SSLEGELWC+PKRSKRW MLPTS + SSG+RN+
Subjt:  SSLEGELWCDPKRSKRWRMLPTSGKLSSGVRNN

A0A5D3CQ36 Putative nuclease HARBI15.7e-3176.6Show/hide
Query:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQ
        MLPTSG+R   VRNHWKC CSEGNGLS RTSG RPKKT+ARMP T+FS PGV+S P TVSSLCFVL ISL IF   TLRTSTH  GMLPD FSQ
Subjt:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQ

A0A5D3DFP2 Uncharacterized protein1.5e-3952.94Show/hide
Query:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFG--------------------------
        MLPTSG+RSSGVRN WKCTC EGNGLS RTSG RPKKT+ARMP+T+FS PG +S P TVS+LC VLV SL IFG                          
Subjt:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFG--------------------------

Query:  ----------------------------DHTLRTSTHATGMLPDMFSQVIGREVSSLEGELWCDPKRSKRWRMLPTSGKLSSGVRNN
                                      T RTSTH +GMLPD FS  IGRE SSLEGEL CDPK SKRW MLPT G+ SSG RN+
Subjt:  ----------------------------DHTLRTSTHATGMLPDMFSQVIGREVSSLEGELWCDPKRSKRWRMLPTSGKLSSGVRNN

A0A5D3DIF8 Gag/pol protein1.1e-3463.91Show/hide
Query:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQVIGREV
        MLPTSG+RSSGVRNHWKCTCSEGN LS RT G  PKKT AR P+ +FS  GV+S   TVSSL  + +I LL+FG      STH   ML    S  IGRE 
Subjt:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQVIGREV

Query:  SSLEGELWCDPKRSKRWRMLPTSGKLSSGVRNN
        SSLE ELWCDPKRSK W ML TSG  SS VRN+
Subjt:  SSLEGELWCDPKRSKRWRMLPTSGKLSSGVRNN

A0A5D3DIK9 DUF4283 domain-containing protein1.7e-2760.83Show/hide
Query:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQ------
        MLPTS +R SGVRNHWK TCSEGNGL+ RTS VR KKT+ARMP+T  S PG +S P  VSSLCFVLVISL IFG  T R STH +GML  MF        
Subjt:  MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQ------

Query:  ----VIGREVSSLEGELWCD
            +  +  S L GELWCD
Subjt:  ----VIGREVSSLEGELWCD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCCAACGAGTGGCAAACGCTCGTCCGGTGTAAGAAACCACTGGAAATGTACTTGCAGCGAAGGAAATGGGCTGAGCTTCAGGACTTCCGGTGTTCGTCCCAAGAA
AACCCAAGCGAGAATGCCACGGACTGAGTTTTCTTGTCCTGGGGTAAGAAGTAGTCCTCTGACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTTTGATCTTCG
GGGATCATACTCTGAGGACTTCAACCCATGCTACTGGCATGCTCCCTGACATGTTTTCCCAAGTTATAGGTCGAGAAGTGAGCTCGTTGGAGGGAGAACTGTGGTGCGAT
CCAAAACGGTCCAAAAGATGGCGAATGCTTCCAACGAGTGGCAAACTCTCGTCTGGTGTCAGAAACAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCCAACGAGTGGCAAACGCTCGTCCGGTGTAAGAAACCACTGGAAATGTACTTGCAGCGAAGGAAATGGGCTGAGCTTCAGGACTTCCGGTGTTCGTCCCAAGAA
AACCCAAGCGAGAATGCCACGGACTGAGTTTTCTTGTCCTGGGGTAAGAAGTAGTCCTCTGACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTTTGATCTTCG
GGGATCATACTCTGAGGACTTCAACCCATGCTACTGGCATGCTCCCTGACATGTTTTCCCAAGTTATAGGTCGAGAAGTGAGCTCGTTGGAGGGAGAACTGTGGTGCGAT
CCAAAACGGTCCAAAAGATGGCGAATGCTTCCAACGAGTGGCAAACTCTCGTCTGGTGTCAGAAACAACTGA
Protein sequenceShow/hide protein sequence
MLPTSGKRSSGVRNHWKCTCSEGNGLSFRTSGVRPKKTQARMPRTEFSCPGVRSSPLTVSSLCFVLVISLLIFGDHTLRTSTHATGMLPDMFSQVIGREVSSLEGELWCD
PKRSKRWRMLPTSGKLSSGVRNN