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IVF0013502 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013502
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein
Genome locationchr12:14888039..14888341
RNA-Seq ExpressionIVF0013502
SyntenyIVF0013502
Gene Ontology termsGO:0008445 - D-aspartate oxidase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KYP31297.1 Retrovirus-related Pol polyprotein from transposon opus [Cajanus cajan]2.33e-3165.43Show/hide
Query:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        D AK+  I +LPYP+C+++VRSFLG AGFYRRF+K+FSK ALPL+NLLQKDV F+ DD CK+AFD LK+ L +TPI+Q+P+
Subjt:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN

MCH92231.1 hypothetical protein [Trifolium medium]2.89e-3269.14Show/hide
Query:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        D AKID I  LP+PTC++++RSFLG AGFYRRFIKDFSKIALPL+NLLQKD+ F  DD CK+AFD LK+ L STP++Q P+
Subjt:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN

RDY12146.1 Retrovirus-related Pol polyprotein, partial [Mucuna pruriens]1.93e-3169.14Show/hide
Query:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        D+ KID I  LP PT L++VRSFLG A FYRRFIKDFSKIALPL+ LLQKDV F+ D +C  AF +LK+RL STPILQ+PN
Subjt:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN

RXY50481.1 hypothetical protein DD573_29565 [Klebsiella pneumoniae]3.27e-3164.2Show/hide
Query:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        D AKID I + PYP+C+++VRSFLG  GFYRRFIKDFSK+ALPL+NLLQK+V F  DD CK+ FD LK  + +TPI+Q+P+
Subjt:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN

WP_192824085.1 Ty3/Gypsy family RNase HI domain-containing protein, partial [Escherichia coli]3.89e-3165.43Show/hide
Query:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        DKAK++ IQ LPYPT +K++RSFLG AGFYRRFIKDFSKIA PL  LLQK+V F+  ++CKKAF+ LK++LV+ PI+Q+P+
Subjt:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN

TrEMBL top hitse value%identityAlignment
A0A151QL68 Transposon Ty3-G Gag-Pol polyprotein8.6e-2569.14Show/hide
Query:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        DKAKI+ I  LPYPTC+K++RSFLG AGFYRRFIKDFSKIA PL+ LLQKD  F  ++ C+ AFD+LK RLVS PIL +PN
Subjt:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN

A0A151QZW2 Transposon Ty3-G Gag-Pol polyprotein (Fragment)1.9e-2465.43Show/hide
Query:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        D AK+  I +LPYP+C+++VRSFLG AGFYRRF+K+FSK ALPL+NLLQKDV F+ DD CK+AFD LK+ L +TPI+Q+P+
Subjt:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN

A0A151RB09 Transposon Ty3-G Gag-Pol polyprotein1.9e-2465.43Show/hide
Query:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        D AK+  I +LPYP+C+++VRSFLG AGFYRRF+K+FSK ALPL+NLLQKDV F+ DD CK+AFD LK+ L +TPI+Q+P+
Subjt:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN

A0A2K3NDP5 RT_RNaseH_2 domain-containing protein (Fragment)5.1e-2570.37Show/hide
Query:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        D AKI+    LPYP+C+ ++RSFLG AGFY RFIKDFSKIALPL+NLLQKDV F  DD CKKAFD LK  L STPI+Q PN
Subjt:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN

A0A392MXJ5 Uncharacterized protein (Fragment)7.8e-2669.14Show/hide
Query:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        D AKID I  LP+PTC++++RSFLG AGFYRRFIKDFSKIALPL+NLLQKD+ F  DD CK+AFD LK+ L STP++Q P+
Subjt:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN

SwissProt top hitse value%identityAlignment
P03359 Gag-Pol polyprotein2.3e-1140.51Show/hide
Query:  AKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        A+   + K+P PT  + VR FLG+AGF R +I  F+ +A PL  L ++ +PF+  +  +KAFD +K+ L+S P L  P+
Subjt:  AKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN

P04323 Retrovirus-related Pol polyprotein from transposon 17.65.8e-1040.51Show/hide
Query:  KIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPF-LIDDNCKKAFDDLKQRLVSTPILQSPN
        KI+ IQK P PT  K++++FLG  G+YR+FI +F+ IA P+T  L+K++     +     AF  LK  +   PIL+ P+
Subjt:  KIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPF-LIDDNCKKAFDDLKQRLVSTPILQSPN

P10394 Retrovirus-related Pol polyprotein from transposon 4123.1e-1140.74Show/hide
Query:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        D  K D IQ  P P      R F+    +YRRFIK+F+  +  +T L +K+VPF   D C+KAF  LK +L++  +LQ P+
Subjt:  DKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN

P21414 Gag-Pol polyprotein4.0e-1139.24Show/hide
Query:  AKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        A+   + K+P PT  + VR FLG+AGF R +I  F+ +A PL  L ++ +PF+  +  ++AFD +K+ L+S P L  P+
Subjt:  AKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus4.7e-1236.17Show/hide
Query:  VSHDKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTPILQSP
        +  D  K+  I ++P PT +K+++ FLG   +YR+FI+D++K+A PLTNL +             VP  +D+   ++F+DLK  L S+ IL  P
Subjt:  VSHDKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQ-----------KDVPFLIDDNCKKAFDDLKQRLVSTPILQSP

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.5e-1038.1Show/hide
Query:  VSHDKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN
        VS D AK++ +   P P    ++R FLG  G+YRRF+K++ KI  PLT LL+K+      +    AF  LK  + + P+L  P+
Subjt:  VSHDKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTCTCATGATAAAGCAAAAATTGACAATATACAAAAATTGCCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTGGTAGTGCCGGCTTTTATAGACGGTT
TATAAAAGATTTTTCTAAAATTGCTTTGCCTCTAACTAATCTCTTGCAAAAAGATGTACCATTTCTGATTGATGACAATTGTAAGAAGGCATTTGATGATCTCAAACAAA
GGTTAGTCTCTACCCCTATCCTTCAATCTCCTAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTCTCATGATAAAGCAAAAATTGACAATATACAAAAATTGCCATATCCAACATGTTTAAAAGATGTTAGATCCTTCCTTGGTAGTGCCGGCTTTTATAGACGGTT
TATAAAAGATTTTTCTAAAATTGCTTTGCCTCTAACTAATCTCTTGCAAAAAGATGTACCATTTCTGATTGATGACAATTGTAAGAAGGCATTTGATGATCTCAAACAAA
GGTTAGTCTCTACCCCTATCCTTCAATCTCCTAATTGA
Protein sequenceShow/hide protein sequence
MVSHDKAKIDNIQKLPYPTCLKDVRSFLGSAGFYRRFIKDFSKIALPLTNLLQKDVPFLIDDNCKKAFDDLKQRLVSTPILQSPN