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IVF0013532 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013532
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr08:16841884..16842257
RNA-Seq ExpressionIVF0013532
SyntenyIVF0013532
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041692.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.62e-2174.63Show/hide
Query:  GDAGLTSVSLGSGRRGGSGFRSAENGGLRGSGRRALRSGCGRLCDGDATSGDYLWRLGWVMVVDGSG
        GDAG   VSL SGRRGGSGFRS ENGG RG+GRRALRS    LCDGDA SGDYLWRLGWV V + +G
Subjt:  GDAGLTSVSLGSGRRGGSGFRSAENGGLRGSGRRALRSGCGRLCDGDATSGDYLWRLGWVMVVDGSG
TYK07960.1 retrotransposon protein, putative, Ty1-copia subclass, expressed [Cucumis melo var. makuwa]1.17e-0787.88Show/hide
Query:  GFRSAENGGLRGSGRRALRSGCGRLCDGDATSG
        GF+SAENGG RG+GRRALRSG GRLCDGDATSG
Subjt:  GFRSAENGGLRGSGRRALRSGCGRLCDGDATSG
TrEMBL top hitse value%identityAlignment
A0A5A7TE57 Retrovirus-related Pol polyprotein from transposon TNT 1-947.3e-1774.63Show/hide
Query:  GDAGLTSVSLGSGRRGGSGFRSAENGGLRGSGRRALRSGCGRLCDGDATSGDYLWRLGWVMVVDGSG
        GDAG   VSL SGRRGGSGFRS ENGG RG+GRRALRS    LCDGDA SGDYLWRLGWV V + +G
Subjt:  GDAGLTSVSLGSGRRGGSGFRSAENGGLRGSGRRALRSGCGRLCDGDATSGDYLWRLGWVMVVDGSG
A0A5D3C9F5 Retrotransposon protein, putative, Ty1-copia subclass, expressed1.9e-0455.22Show/hide
Query:  TTRGWNVVALRRLAGGGDAGLTSVSLGSGRRGGSGFRSAENGGLRGSGRRALRSGCGRLCDGDATSG
        T RG +    RR     D       L     G  GF+SAENGG RG+GRRALRSG GRLCDGDATSG
Subjt:  TTRGWNVVALRRLAGGGDAGLTSVSLGSGRRGGSGFRSAENGGLRGSGRRALRSGCGRLCDGDATSG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTACGACTCGGGGATGGAATGTGGTCGCTCTGCGACGGCTTGCAGGCGGAGGAGACGCGGGTCTGACTAGCGTTTCGCTTGGGAGCGGTCGGCGGGGTGGGTCAGG
TTTTCGATCCGCAGAGAATGGTGGCTTGAGAGGCTCAGGTCGACGGGCGCTTCGTTCGGGGTGCGGGCGGCTGTGCGACGGAGACGCGACGAGTGGCGACTACTTATGGA
GGCTCGGATGGGTTATGGTGGTCGACGGCAGTGGCAGCCTAGGGTTAACAAGAAGGGATTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTACGACTCGGGGATGGAATGTGGTCGCTCTGCGACGGCTTGCAGGCGGAGGAGACGCGGGTCTGACTAGCGTTTCGCTTGGGAGCGGTCGGCGGGGTGGGTCAGG
TTTTCGATCCGCAGAGAATGGTGGCTTGAGAGGCTCAGGTCGACGGGCGCTTCGTTCGGGGTGCGGGCGGCTGTGCGACGGAGACGCGACGAGTGGCGACTACTTATGGA
GGCTCGGATGGGTTATGGTGGTCGACGGCAGTGGCAGCCTAGGGTTAACAAGAAGGGATTTTTAG
Protein sequenceShow/hide protein sequence
MGTTRGWNVVALRRLAGGGDAGLTSVSLGSGRRGGSGFRSAENGGLRGSGRRALRSGCGRLCDGDATSGDYLWRLGWVMVVDGSGSLGLTRRDF