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IVF0013538 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013538
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptiontranscription factor RADIALIS-like
Genome locationchr11:1003275..1005621
RNA-Seq ExpressionIVF0013538
SyntenyIVF0013538
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571117.1 Protein RADIALIS-like 2, partial [Cucurbita argyrosperma subsp. sororia]8.58e-4978.9Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ
        MAS+SSS H   SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S++S S      SNANI DQ
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ

Query:  EQRMRNMKL
        EQRMRN+KL
Subjt:  EQRMRNMKL

XP_004148844.1 transcription factor RADIALIS [Cucumis sativus]3.31e-5789.09Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ
        MASISSSS     SSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS     T+SNANIKDQ
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ

Query:  EQRMRNMKLH
        EQRMRNMKLH
Subjt:  EQRMRNMKLH

XP_008460938.1 PREDICTED: protein RADIALIS-like 2 [Cucumis melo]2.36e-70100Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ
        MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ

Query:  EQRMRNMKLH
        EQRMRNMKLH
Subjt:  EQRMRNMKLH

XP_023513343.1 protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]8.58e-4977.98Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ
        MAS+SSS H   SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S++S+S      SNAN+ DQ
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ

Query:  EQRMRNMKL
        EQRMRN+KL
Subjt:  EQRMRNMKL

XP_038902123.1 protein RADIALIS-like 2 [Benincasa hispida]9.32e-5382.73Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ
        MASISSS HDS S  WTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKT DEVKRHFD LVEDVKHIESGRVPFP YTS+S+    P TS N N+ DQ
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ

Query:  EQRMRNMKLH
        EQRMRN+KLH
Subjt:  EQRMRNMKLH

TrEMBL top hitse value%identityAlignment
A0A0A0LL58 MYB transcription factor MYB1421.2e-4289.09Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ
        MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSS     T+SNANIKDQ
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ

Query:  EQRMRNMKLH
        EQRMRNMKLH
Subjt:  EQRMRNMKLH

A0A1S3CDK8 protein RADIALIS-like 29.7e-53100Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ
        MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ

Query:  EQRMRNMKLH
        EQRMRNMKLH
Subjt:  EQRMRNMKLH

A0A6J1CYR5 protein RADIALIS-like 21.9e-3275Show/hide
Query:  SSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRN
        SS DS S SWTPNQNKAFERALAVFDKDTPDRW NVANAV GGKT DEVKRHFD LVEDVKHIESGR+PFP YT++++       SSN N+ D+E+RMRN
Subjt:  SSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRN

Query:  MKLH
        +KLH
Subjt:  MKLH

A0A6J1FXX9 protein RADIALIS-like 21.2e-3476.15Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ
        MAS++SS     SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S++S+S     +SNANI DQ
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ

Query:  EQRMRNMKL
        EQRMR++KL
Subjt:  EQRMRNMKL

A0A6J1JBS7 protein RADIALIS-like 24.1e-3576.15Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ
        MAS+SSS H   SSSWTP +NKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD LVEDVKHIE G VPFP Y+S++S++     +SNANI DQ
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ

Query:  EQRMRNMKL
        EQRMRN+KL
Subjt:  EQRMRNMKL

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.8e-2252.38Show/hide
Query:  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRM
        SSS    +S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++ LV+D+  IE+G VPFP Y +S          +N  +  +E+RM
Subjt:  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRM

Query:  RNMKL
        RNM+L
Subjt:  RNMKL

Q1A173 Protein RADIALIS-like 63.6e-2055.24Show/hide
Query:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQR-M
        +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED+ +IE+GRVP P Y +  S+S         +I D + R M
Subjt:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQR-M

Query:  RNMKL
        +N+K+
Subjt:  RNMKL

Q58FS3 Transcription factor RADIALIS1.0e-2255.32Show/hide
Query:  WTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKL
        W+  +NKAFERALAV+DKDTPDRW NVA AV  G+TP+EVK+H++ LVED+K+IESG+VPFP Y            ++  N+K  E+R RN+K+
Subjt:  WTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKL

Q8GW75 Protein RADIALIS-like 54.0e-1954.29Show/hide
Query:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQR-M
        +SS  S+SSSWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D LVED+ +IE   VP PKY +          S +  I D + R M
Subjt:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQR-M

Query:  RNMKL
        +NM++
Subjt:  RNMKL

Q9SIJ5 Protein RADIALIS-like 23.1e-2457.8Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ
        MAS S SS+   S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D LV D++ IE+G VPFP Y +++ +S+  R      ++D+
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ

Query:  EQRMRNMKL
        E+RMR+MKL
Subjt:  EQRMRNMKL

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.8e-2054.29Show/hide
Query:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQR-M
        +SS  S+SSSWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D LVED+ +IE   VP PKY +          S +  I D + R M
Subjt:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQR-M

Query:  RNMKL
        +NM++
Subjt:  RNMKL

AT1G75250.1 RAD-like 61.5e-2164.2Show/hide
Query:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS
        +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED+ +IE+GRVP P Y +  S+S
Subjt:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSS

AT1G75250.2 RAD-like 62.5e-2155.24Show/hide
Query:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQR-M
        +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED+ +IE+GRVP P Y +  S+S         +I D + R M
Subjt:  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQR-M

Query:  RNMKL
        +N+K+
Subjt:  RNMKL

AT2G21650.1 Homeodomain-like superfamily protein2.2e-2557.8Show/hide
Query:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ
        MAS S SS+   S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D LV D++ IE+G VPFP Y +++ +S+  R      ++D+
Subjt:  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQ

Query:  EQRMRNMKL
        E+RMR+MKL
Subjt:  EQRMRNMKL

AT4G39250.1 RAD-like 12.7e-2352.38Show/hide
Query:  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRM
        SSS    +S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++ LV+D+  IE+G VPFP Y +S          +N  +  +E+RM
Subjt:  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRM

Query:  RNMKL
        RNM+L
Subjt:  RNMKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGA
TCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCG
TTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCCTCCGCCCCTAGAACCTCCAGTAATGCTAACATCAAAGACCAAGAACAAAGGATGAGAAACATGAAACTCCAT
TAA
mRNA sequenceShow/hide mRNA sequence
TCTTCACCCCTTTAAATTAATTTTAATTACCAGTTTTTGCCCCTCAACAATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAA
ACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGG
CATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCCTCCGCCCCTAGAACCTCCAGTAA
TGCTAACATCAAAGACCAAGAACAAAGGATGAGAAACATGAAACTCCATTAAATTGGTTAAAATTGAAGGCAAATGGATGGGATTAAGAAGAATGAAAAAGTGGATAGGT
GGTTGCTGTTTTTGCGCCTAAGATAACAAAAAAGGAATTAATGTAGCCAAATTTGCAATTTATGTGTTTTTTTTTCTTCCTCTTGAAAGTGTATTTGCCCAACTAAAAAG
CTAATCAATGT
Protein sequenceShow/hide protein sequence
MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH