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IVF0013617 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013617
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:22979342..22979614
RNA-Seq ExpressionIVF0013617
SyntenyIVF0013617
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR025314 - Domain of unknown function DUF4219


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038193.1 uncharacterized protein E6C27_scaffold270G00260 [Cucumis melo var. makuwa]4.11e-4288.46Show/hide
Query:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLF
        MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IPALPDN TMAQIK QKEKKTK+S+AKACLF
Subjt:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLF

KAA0045175.1 uncharacterized protein E6C27_scaffold30G001760 [Cucumis melo var. makuwa]2.27e-4187.18Show/hide
Query:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLF
        MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IP LPDN TMAQIK QKEKKTK+S+AKACLF
Subjt:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLF

KAA0059855.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.40e-4088.46Show/hide
Query:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLF
        MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IPALPDN TMAQIK QKEKKTK+S+AKACLF
Subjt:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLF

TYK12703.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.82e-3988.46Show/hide
Query:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLF
        MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IPALPDN TMAQIK QKEKKTK+S+AKACLF
Subjt:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLF

XP_008456224.1 PREDICTED: uncharacterized protein LOC103496228 [Cucumis melo]1.11e-3987.18Show/hide
Query:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLF
        MD +ASSSFSSISP IFDGDNYQVW VRMEAYMEALDIWEAVEEDY IPALP+N TMAQIKVQKEKKTK+ +AKACLF
Subjt:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLF

TrEMBL top hitse value%identityAlignment
A0A5A7SQF5 Retrovirus-related Pol polyprotein from transposon TNT 1-946.5e-3187.8Show/hide
Query:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLFVLQS
        MD V SSSFSSISP IFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDN TMAQIKVQKEKKTK+S+ KACLF   S
Subjt:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLFVLQS

A0A5D3BL45 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-3085.37Show/hide
Query:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLFVLQS
        MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IPALPDN TMAQIK QKEKKTK+S+AKACLF   S
Subjt:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLFVLQS

A0A5D3DBU0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-3085.37Show/hide
Query:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLFVLQS
        MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IPALPDN TMAQIK QKEKKTK+S+AKACLF   S
Subjt:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLFVLQS

A0A5D3DMJ1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-3085.37Show/hide
Query:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLFVLQS
        MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IPALPDN TMAQIK QKEKKTK+S+AKACLF   S
Subjt:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLFVLQS

A0A5D3E2V7 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-3085.37Show/hide
Query:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLFVLQS
        MD + SSSF+SISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDY IPALPDN TMAQIK QKEKKTK+S+AKACLF   S
Subjt:  MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLFVLQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGTCGTAGCAAGTTCCAGTTTCTCTTCAATTTCTCCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAGGCATATATGGAAGCTTTGGA
TATTTGGGAAGCAGTGGAAGAGGATTATGTAATTCCTGCTCTTCCAGACAATCTTACCATGGCACAAATAAAAGTGCAAAAGGAGAAGAAGACAAAGAGATCCGAGGCAA
AGGCCTGTTTGTTTGTACTGCAATCTCATCTACTATCTTCACTCAAATTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGTCGTAGCAAGTTCCAGTTTCTCTTCAATTTCTCCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAGGCATATATGGAAGCTTTGGA
TATTTGGGAAGCAGTGGAAGAGGATTATGTAATTCCTGCTCTTCCAGACAATCTTACCATGGCACAAATAAAAGTGCAAAAGGAGAAGAAGACAAAGAGATCCGAGGCAA
AGGCCTGTTTGTTTGTACTGCAATCTCATCTACTATCTTCACTCAAATTATGA
Protein sequenceShow/hide protein sequence
MDVVASSSFSSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYVIPALPDNLTMAQIKVQKEKKTKRSEAKACLFVLQSHLLSSLKL