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IVF0013621 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013621
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr04:23913013..23913605
RNA-Seq ExpressionIVF0013621
SyntenyIVF0013621
Gene Ontology termsNA
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7018902.1 unnamed protein product [Microthlaspi erraticum]1.33e-5659.28Show/hide
Query:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK----------------------------DGF
        +HRI LE+ +K  I+PQRRLNP LKEVV KE+LKL D GIIYP+SDSTW+S +H VPKK G+TV+KNDK                            DG+
Subjt:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK----------------------------DGF

Query:  SDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY
        S F+QIPI   DQ+KTTFTC YGT+A+RRMP GLCNA  TFQRCM SIFSD IE+ +EVFMDDF+VY
Subjt:  SDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY

CAA7034301.1 unnamed protein product [Microthlaspi erraticum]2.18e-5859.28Show/hide
Query:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK----------------------------DGF
        +HRI LE+ +K  I+PQRRLNP LKEVV KE+LKL D GIIYP+SDSTW+S +H VPKK G+TV+KNDK                            DG+
Subjt:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK----------------------------DGF

Query:  SDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY
        S F+QIPI   DQ+KTTFTC YGT+A+RRMP GLCNA  TFQRCM SIFSD IE+ +EVFMDDF+VY
Subjt:  SDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY

CAA7035511.1 unnamed protein product [Microthlaspi erraticum]2.66e-5759.28Show/hide
Query:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK----------------------------DGF
        +HRI LE+ +K  I+PQRRLNP LKEVV KE+LKL D GIIYP+SDSTW+S +H VPKK G+TV+KNDK                            DG+
Subjt:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK----------------------------DGF

Query:  SDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY
        S F+QIPI   DQ+KTTFTC YGT+A+RRMP GLCNA  TFQRCM SIFSD IE+ +EVFMDDF+VY
Subjt:  SDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY

CAA7056081.1 unnamed protein product [Microthlaspi erraticum]3.60e-5759.28Show/hide
Query:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK----------------------------DGF
        +HRI LE+ +K  I+PQRRLNP LKEVV KE+LKL D GIIYP+SDSTW+S +H VPKK G+TV+KNDK                            DG+
Subjt:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK----------------------------DGF

Query:  SDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY
        S F+QIPI   DQ+KTTFTC YGT+A+RRMP GLCNA  TFQRCM SIFSD IE+ +EVFMDDF+VY
Subjt:  SDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY

XP_022159045.1 uncharacterized protein LOC111025486 [Momordica charantia]1.94e-5956.84Show/hide
Query:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK-------------------------------
        MHRI+LE+  K   +PQRRLNPT+KEVVMKE+LKL + GIIYP+SDS WVSLIHVVPKK G+TVV+N                                 
Subjt:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK-------------------------------

Query:  --------------------DGFSDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY
                            DGFS FYQIPIA EDQ+KTTFTC YGTYA+RRM  GLCNA GTFQRCMMSIFS++IEKCIEVFMDDFTV+
Subjt:  --------------------DGFSDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY

TrEMBL top hitse value%identityAlignment
A0A1U7ZU26 uncharacterized protein LOC1045940341.2e-4756.32Show/hide
Query:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK-------------------------------
        MHRI+LE+GAK   +PQR+LNP +KEVVMKEVLKL D GIIY +SDS WVS IHVVPKK G+T+VKN                                 
Subjt:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK-------------------------------

Query:  --------------------DGFSDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY
                            DGFS +YQI IA EDQ+KTTFTC +GT+A+RRMP GLCNA GTFQRCM+SIFSDFIEKCIEVFMDDFTVY
Subjt:  --------------------DGFSDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY

A0A6D2JTK0 Reverse transcriptase6.2e-4759.28Show/hide
Query:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK----------------------------DGF
        +HRI LE+ +K  I+PQRRLNP LKEVV KE+LKL D GIIYP+SDSTW+S +H VPKK G+TV+KNDK                            DG+
Subjt:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK----------------------------DGF

Query:  SDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY
        S F+QIPI   DQ+KTTFTC YGT+A+RRMP GLCNA  TFQRCM SIFSD IE+ +EVFMDDF+VY
Subjt:  SDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY

A0A6D2L431 Uncharacterized protein6.2e-4759.28Show/hide
Query:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK----------------------------DGF
        +HRI LE+ +K  I+PQRRLNP LKEVV KE+LKL D GIIYP+SDSTW+S +H VPKK G+TV+KNDK                            DG+
Subjt:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK----------------------------DGF

Query:  SDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY
        S F+QIPI   DQ+KTTFTC YGT+A+RRMP GLCNA  TFQRCM SIFSD IE+ +EVFMDDF+VY
Subjt:  SDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY

A0A6J1DXI8 uncharacterized protein LOC1110254868.6e-4956.84Show/hide
Query:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK-------------------------------
        MHRI+LE+  K   +PQRRLNPT+KEVVMKE+LKL + GIIYP+SDS WVSLIHVVPKK G+TVV+N                                 
Subjt:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK-------------------------------

Query:  --------------------DGFSDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY
                            DGFS FYQIPIA EDQ+KTTFTC YGTYA+RRM  GLCNA GTFQRCMMSIFS++IEKCIEVFMDDFTV+
Subjt:  --------------------DGFSDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY

A0A6P8DCT8 Reverse transcriptase3.6e-4754.21Show/hide
Query:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK-------------------------------
        MHRI+LE+ A+ K  PQR+LNPT+KEVVMKE+LKL D+GIIYP+SDS WVS IHVVPKK G+T+VKN++                               
Subjt:  MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDK-------------------------------

Query:  --------------------DGFSDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY
                            DG+S +YQI +A EDQ+KTTFTC +GT+A+RRMP GLC+A GTFQRCMMSIFSD IE CIEVFMDDFTVY
Subjt:  --------------------DGFSDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.5e-0743.08Show/hide
Query:  FYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY
        F+QI +  E   KT F+  +G Y + RMP GL NA  TFQRCM  I    + K   V++DD  V+
Subjt:  FYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY

P20825 Retrovirus-related Pol polyprotein from transposon 2971.8e-0641.54Show/hide
Query:  FYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY
        F+QI +  E   KT F+   G Y + RMP GL NA  TFQRCM +I    + K   V++DD  ++
Subjt:  FYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY

P31843 RNA-directed DNA polymerase homolog2.4e-0840.58Show/hide
Query:  SDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVYVI
        S ++Q+ IA  D+ KTT    YG++ FR MP GL NAL TF   M ++  ++++  + V++DD  VY I
Subjt:  SDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVYVI

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.3e-0632.29Show/hide
Query:  VSDSTWVSLIHVVPKKIGMTVVKNDKDGFSDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY
        +SD   +  I  +  +IG   +    D  S ++QIP+  +D+ KT F    G Y +  MP GL NA  TF R M   F D   + + V++DD  ++
Subjt:  VSDSTWVSLIHVVPKKIGMTVVKNDKDGFSDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY

Q99315 Transposon Ty3-G Gag-Pol polyprotein2.3e-0632.29Show/hide
Query:  VSDSTWVSLIHVVPKKIGMTVVKNDKDGFSDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY
        +SD   +  I  +  +IG   +    D  S ++QIP+  +D+ KT F    G Y +  MP GL NA  TF R M   F D   + + V++DD  ++
Subjt:  VSDSTWVSLIHVVPKKIGMTVVKNDKDGFSDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNALGTFQRCMMSIFSDFIEKCIEVFMDDFTVY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCGTATTATCTTGGAGGAGGGAGCAAAAGAAAAAATCCAACCACAAAGAAGACTTAACCCAACATTGAAGGAAGTTGTCATGAAAGAGGTACTAAAGCTAAAAGA
TGTCGGAATTATCTATCCCGTCTCGGATAGTACATGGGTAAGTCTAATTCATGTGGTCCCAAAGAAGATCGGGATGACCGTTGTGAAGAACGACAAAGATGGATTTTCCG
ATTTTTACCAAATTCCTATAGCATGTGAAGACCAAAAGAAAACAACTTTTACTTGTGATTATGGAACTTATGCATTTAGGCGTATGCCATGTGGTCTTTGTAATGCACTG
GGCACATTCCAACGTTGCATGATGAGCATATTTTCCGATTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTTCACAGTTTATGTGATAGTTTTGATGCATGTTTA
G
mRNA sequenceShow/hide mRNA sequence
ATGCACCGTATTATCTTGGAGGAGGGAGCAAAAGAAAAAATCCAACCACAAAGAAGACTTAACCCAACATTGAAGGAAGTTGTCATGAAAGAGGTACTAAAGCTAAAAGA
TGTCGGAATTATCTATCCCGTCTCGGATAGTACATGGGTAAGTCTAATTCATGTGGTCCCAAAGAAGATCGGGATGACCGTTGTGAAGAACGACAAAGATGGATTTTCCG
ATTTTTACCAAATTCCTATAGCATGTGAAGACCAAAAGAAAACAACTTTTACTTGTGATTATGGAACTTATGCATTTAGGCGTATGCCATGTGGTCTTTGTAATGCACTG
GGCACATTCCAACGTTGCATGATGAGCATATTTTCCGATTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTTCACAGTTTATGTGATAGTTTTGATGCATGTTTA
G
Protein sequenceShow/hide protein sequence
MHRIILEEGAKEKIQPQRRLNPTLKEVVMKEVLKLKDVGIIYPVSDSTWVSLIHVVPKKIGMTVVKNDKDGFSDFYQIPIACEDQKKTTFTCDYGTYAFRRMPCGLCNAL
GTFQRCMMSIFSDFIEKCIEVFMDDFTVYVIVLMHV