; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0013715 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013715
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionserine/arginine-rich splicing factor RSZ21
Genome locationchr10:3039109..3044265
RNA-Seq ExpressionIVF0013715
SyntenyIVF0013715
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032266.1 Serine/arginine-rich splicing factor RSZ21, partial [Cucurbita argyrosperma subsp. argyrosperma]9.70e-5668.71Show/hide
Query:  LTVTFCRLPSIGALRLRTDSVVFISYHRLISYNSLSIPRDLCLDLFVVVAAFASWGWAVLRSFVTMTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVAR
        LT  FCRLPSIGA RLR                    P D          +F+     +L SF TMTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVAR
Subjt:  LTVTFCRLPSIGALRLRTDSVVFISYHRLISYNSLSIPRDLCLDLFVVVAAFASWGWAVLRSFVTMTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVAR

Query:  RPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRR
        RPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKG GGGGGRR
Subjt:  RPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRR

TYK15593.1 serine/arginine-rich splicing factor RSZ21 isoform X1 [Cucumis melo var. makuwa]4.60e-5857.28Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRR------------------
        MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRR                  
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRR------------------

Query:  --------------------------------------------SNSPRGKRSPRRRSITPPKRGR----------------YLDGTD--NKIDAGNKGW
                                                    SNSPRGKRSPRRRSITPPKRGR                Y +G     KIDAGNK  
Subjt:  --------------------------------------------SNSPRGKRSPRRRSITPPKRGR----------------YLDGTD--NKIDAGNKGW

Query:  ICAGRT
         CAGRT
Subjt:  ICAGRT

XP_008446226.1 PREDICTED: serine/arginine-rich splicing factor RSZ21 [Cucumis melo]6.22e-5462.65Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRR------------------
        MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRR                  
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRR------------------

Query:  --------------------------------------------SNSPRGKRSPRRRSITPPKRGR
                                                    SNSPRGKRSPRRRSITPPKRGR
Subjt:  --------------------------------------------SNSPRGKRSPRRRSITPPKRGR

XP_011655636.1 serine/arginine-rich splicing factor RSZ21 [Cucumis sativus]9.09e-5462.28Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRR------------------
        MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRR                  
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRR------------------

Query:  ---------------------------------------------SNSPRGKRSPRRRSITPPKRGR
                                                     SNSPRGKRSPRRRSITPPKRGR
Subjt:  ---------------------------------------------SNSPRGKRSPRRRSITPPKRGR

XP_038892593.1 serine/arginine-rich splicing factor RSZ21 [Benincasa hispida]4.34e-5565.41Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRR------------------
        MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRR                  
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRR------------------

Query:  -------------------------------------SNSPRGKRSPRRRSITPPKRGR
                                             SNSPRGKRSPRRRSITPPKRGR
Subjt:  -------------------------------------SNSPRGKRSPRRRSITPPKRGR

TrEMBL top hitse value%identityAlignment
A0A0A0KTR0 RRM domain-containing protein3.0e-9071.81Show/hide
Query:  MTRKPNSLSPLTVTFCRLPSIGALRLRTDSVVFISYHRLISYNSLSIPRDLCLDLFVVVAAFASWGWAVLRSFVTMTRVYIGNLDPRVTERDLEDEFRMF
        + RKPNSL  LTVTFCRLPSIGALRLRTD VVFI YH LIS  SLSIPRDLCLDLFVVVAAFASWGWAVLRSFVTMTRVYIGNLDPRVTERDLEDEFRMF
Subjt:  MTRKPNSLSPLTVTFCRLPSIGALRLRTDSVVFISYHRLISYNSLSIPRDLCLDLFVVVAAFASWGWAVLRSFVTMTRVYIGNLDPRVTERDLEDEFRMF

Query:  GVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGG---------------------------------GRRSNSPRGKRSP
        GVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGG                                 GRRSNSPRGKRSP
Subjt:  GVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGG---------------------------------GRRSNSPRGKRSP

Query:  RRRSITPPKRGR-------------------------YLDGTDNKIDAGNKGWICAGRT
        RRRSITPPKRGR                         YL+GTDN+IDAG K   CAGRT
Subjt:  RRRSITPPKRGR-------------------------YLDGTDNKIDAGNKGWICAGRT

A0A1S3BEJ4 serine/arginine-rich splicing factor RSZ216.2e-4362.65Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGG---------------------
        MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGG                     
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGG---------------------

Query:  -----------------------------------------GRRSNSPRGKRSPRRRSITPPKRGR
                                                 GRRSNSPRGKRSPRRRSITPPKRGR
Subjt:  -----------------------------------------GRRSNSPRGKRSPRRRSITPPKRGR

A0A5D3CUM7 Serine/arginine-rich splicing factor RSZ21 isoform X11.2e-4657.28Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGG---------------------
        MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGG                     
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGG---------------------

Query:  -----------------------------------------GRRSNSPRGKRSPRRRSITPPKRGR----------------YLDGTD--NKIDAGNKGW
                                                 GRRSNSPRGKRSPRRRSITPPKRGR                Y +G     KIDAGNK  
Subjt:  -----------------------------------------GRRSNSPRGKRSPRRRSITPPKRGR----------------YLDGTD--NKIDAGNKGW

Query:  ICAGRT
         CAGRT
Subjt:  ICAGRT

A0A6J1DBV4 serine/arginine-rich splicing factor RSZ211.4e-4263.75Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGG---------------------
        MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHN+KG GGGG                     
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGG---------------------

Query:  -----------------------------------GRRSNSPRGKRSPRRRSITPPKRGR
                                           GRRSNSPRGKRSPRRRSITPPKRGR
Subjt:  -----------------------------------GRRSNSPRGKRSPRRRSITPPKRGR

A0A6J1G1N9 serine/arginine-rich splicing factor RSZ21-like isoform X11.8e-4262.05Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGG---------------------
        MTRVYIGNLDPRV+ERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGG                     
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGG---------------------

Query:  -----------------------------------------GRRSNSPRGKRSPRRRSITPPKRGR
                                                 GRRSNSPRGKRSPRRRSITPPKRGR
Subjt:  -----------------------------------------GRRSNSPRGKRSPRRRSITPPKRGR

SwissProt top hitse value%identityAlignment
O81126 Serine/arginine-rich splicing factor RSZ228.1e-3273.63Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHN--SKGGGGGGGRRSNSPRGK
        M+RVY+GNLDPRVTER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALDGKNGWRVE SHN   +GGGG GG R     G+
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHN--SKGGGGGGGRRSNSPRGK

O81127 Serine/arginine-rich splicing factor RSZ212.2e-3757.14Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGG--------------------
        MTRVY+GNLDPRVTER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD KNGWRVELSH  KGG GGGG                    
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGG--------------------

Query:  -----------------------------RRSNSPRGKRS-PRRRSITPPKRGR
                                     RRS SPRG+RS PRRRS+TPP+RGR
Subjt:  -----------------------------RRSNSPRGKRS-PRRRSITPPKRGR

Q69KL9 Serine/arginine-rich splicing factor RSZ21A1.2e-3074.12Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRSNS
        M RVY+GNLDPRVT R+LEDEFR+FGVLRSVWVAR+PPG+AFI+FDDRRDA DAI+ +DGKNGWRVELS N+  G GG  R  +S
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRSNS

Q6K9C3 Serine/arginine-rich splicing factor RSZ234.9e-2975.9Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRS
        M RVY+GNLDPRVT R++EDEFR+FGVLRSVWVAR+PPG+AFI+FDDRRDA DAI+ LDGKNGWRVELS  +K G G G  RS
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRS

Q9SJA6 Serine/arginine-rich splicing factor RSZ22A3.6e-3273.03Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRSNSPRGK
        M+RVY+GNLDPRVTER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ +DGKNGWRVE SHN  GGGG GG R     G+
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRSNSPRGK

Arabidopsis top hitse value%identityAlignment
AT1G23860.1 RS-containing zinc finger protein 211.6e-3857.14Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGG--------------------
        MTRVY+GNLDPRVTER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD KNGWRVELSH  KGG GGGG                    
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGG--------------------

Query:  -----------------------------RRSNSPRGKRS-PRRRSITPPKRGR
                                     RRS SPRG+RS PRRRS+TPP+RGR
Subjt:  -----------------------------RRSNSPRGKRS-PRRRSITPPKRGR

AT1G23860.2 RS-containing zinc finger protein 211.6e-3857.14Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGG--------------------
        MTRVY+GNLDPRVTER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD KNGWRVELSH  KGG GGGG                    
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGG--------------------

Query:  -----------------------------RRSNSPRGKRS-PRRRSITPPKRGR
                                     RRS SPRG+RS PRRRS+TPP+RGR
Subjt:  -----------------------------RRSNSPRGKRS-PRRRSITPPKRGR

AT1G23860.3 RS-containing zinc finger protein 214.2e-3666.12Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGG-GGGGGRRS----------------
        MTRVY+GNLDPRVTER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD KNGWRVELSH  KGG GGGGGRR                 
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGG-GGGGGRRS----------------

Query:  --NSPRGKRSPRRRSITPPKR
             RG+ S RRRS +P +R
Subjt:  --NSPRGKRSPRRRSITPPKR

AT1G23860.4 RS-containing zinc finger protein 211.2e-3859.33Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGG-GGGGGRR-----------------
        MTRVY+GNLDPRVTER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD KNGWRVELSH  KGG GGGGGRR                 
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGG-GGGGGRR-----------------

Query:  ---------------------------SNSPRGKRS-PRRRSITPPKRGR
                                   S SPRG+RS PRRRS+TPP+RGR
Subjt:  ---------------------------SNSPRGKRS-PRRRSITPPKRGR

AT2G24590.1 RNA recognition motif and CCHC-type zinc finger domains containing protein2.6e-3373.03Show/hide
Query:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRSNSPRGK
        M+RVY+GNLDPRVTER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ +DGKNGWRVE SHN  GGGG GG R     G+
Subjt:  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRSNSPRGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATTTATATAAAGAATGTATTTGAGTTAGCTTTCAAACAAAGGCATATGACAAGAAAACCAAACTCACTCAGCCCCTTGACTGTCACCTTCTGCAGACTT
CCGAGCATCGGAGCTCTGCGACTACGGACGGACAGTGTCGTTTTCATTTCTTATCACCGGCTGATCTCTTACAACTCTTTGTCGATTCCGCGAGATCTTTGTCTT
GACTTATTTGTTGTTGTAGCAGCTTTCGCATCCTGGGGTTGGGCGGTTCTTCGCTCATTCGTTACAATGACTAGAGTTTATATTGGTAATCTGGATCCACGCGTT
ACAGAGAGGGATCTCGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCGTTTATTGAGTTTGATGATCGC
AGGGATGCTCTAGATGCAATACAAGCTTTGGATGGAAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGTGGGGGAGGAGGTGGTGGCCGAAGGAGT
AACAGTCCTCGTGGTAAAAGATCCCCACGACGTCGCAGCATTACACCTCCTAAGCGCGGTCGCTACTTGGACGGCACTGACAATAAGATTGATGCTGGAAACAAA
GGCTGGATTTGTGCTGGTAGAACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAATTTATATAAAGAATGTATTTGAGTTAGCTTTCAAACAAAGGCATATGACAAGAAAACCAAACTCACTCAGCCCCTTGACTGTCACCTTCTGCAGACTT
CCGAGCATCGGAGCTCTGCGACTACGGACGGACAGTGTCGTTTTCATTTCTTATCACCGGCTGATCTCTTACAACTCTTTGTCGATTCCGCGAGATCTTTGTCTT
GACTTATTTGTTGTTGTAGCAGCTTTCGCATCCTGGGGTTGGGCGGTTCTTCGCTCATTCGTTACAATGACTAGAGTTTATATTGGTAATCTGGATCCACGCGTT
ACAGAGAGGGATCTCGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCGTTTATTGAGTTTGATGATCGC
AGGGATGCTCTAGATGCAATACAAGCTTTGGATGGAAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGTGGGGGAGGAGGTGGTGGCCGAAGGAGT
AACAGTCCTCGTGGTAAAAGATCCCCACGACGTCGCAGCATTACACCTCCTAAGCGCGGTCGCTACTTGGACGGCACTGACAATAAGATTGATGCTGGAAACAAA
GGCTGGATTTGTGCTGGTAGAACTTAG
Protein sequenceShow/hide protein sequence
MEIYIKNVFELAFKQRHMTRKPNSLSPLTVTFCRLPSIGALRLRTDSVVFISYHRLISYNSLSIPRDLCLDLFVVVAAFASWGWAVLRSFVTMTRVYIGNLDPRV
TERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRSNSPRGKRSPRRRSITPPKRGRYLDGTDNKIDAGNK
GWICAGRT