; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0013742 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013742
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr01:11020886..11021730
RNA-Seq ExpressionIVF0013742
SyntenyIVF0013742
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033551.1 retrotransposon protein [Cucumis melo var. makuwa]2.57e-11775.83Show/hide
Query:  TVIKSRIKLLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVP
        TVI++RIKLLKKTFQAIAEMRGP GS FGWNDDVKCII ERDVFDHWV  HPAAK LLNKPF HYDAL                              VP
Subjt:  TVIKSRIKLLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVP

Query:  TKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLT
        TKD IDMEFP MCSPRMNMSP++MMGGRSGRS+DGR GS+ QKRKHSMQQFETYDLI ECMEAATDQLRTIAEWP+K MSWED MAAQVIELI+AI NLT
Subjt:  TKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLT

Query:  MAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGD
        MAEKSKCVMLVNQKVSLMRSFIKMPD MKA Y R+LLGG+
Subjt:  MAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGD

KAA0048148.1 retrotransposon protein [Cucumis melo var. makuwa]3.39e-131100Show/hide
Query:  MHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQ
        MHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQ
Subjt:  MHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQ

Query:  QFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGDP
        QFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGDP
Subjt:  QFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGDP

KAA0055070.1 retrotransposon protein [Cucumis melo var. makuwa]2.11e-9867.67Show/hide
Query:  LLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDME
        +LKKTFQAI EMRGP GS F WND +KCII ERDVFDHWV+ HP AK  LNKPF HYD LSYVF K +ATGAH+ETFADI SN+S   +S   +DGIDME
Subjt:  LLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDME

Query:  FPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCV
        FP MCSPRMNMSP+DM+GGRS RSSDGRTGSSEQKRK SMQQFET+DLI E                            QVIEL++ I NLTMAEKSKC+
Subjt:  FPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCV

Query:  MLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGD
        M++NQKVSLMRSFIKM D M AAYC+VLLGGD
Subjt:  MLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGD

KAA0064184.1 retrotransposon protein [Cucumis melo var. makuwa]1.21e-9266.26Show/hide
Query:  MVGCSLTTTVIKSRIKLLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNM
        MV CSL TT+I+SRIKLLKKTFQAIAEMRGP                              AKRLLNK    YDALS+VF KD+ATGA AETFADIDSN+
Subjt:  MVGCSLTTTVIKSRIKLLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNM

Query:  SAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIEL
            DSVP +DGI+MEFP MC PRMNMSPKDMM GRS +SSD R  SS QKRK  MQQ ETYDLIR+CME ATDQLRTI EWP+KAMS ED M  QVIEL
Subjt:  SAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIEL

Query:  IKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRV
         ++I NLT+AEKSKC+M+VNQKVSL RSFIKM D MK AYC+V
Subjt:  IKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRV

TYK02844.1 retrotransposon protein [Cucumis melo var. makuwa]2.86e-9466.26Show/hide
Query:  MVGCSLTTTVIKSRIKLLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNM
        MV CSL TT+I+SRIKLLKKTFQAIAEMRGP                              AKRLLNK    YDALS+VF KD+ATGA AETFADIDSN+
Subjt:  MVGCSLTTTVIKSRIKLLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNM

Query:  SAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIEL
            DSVP +DGI+MEFP MC PRMNMSPKDMM GRS +SSD R  SS QKRK  MQQ ETYDLIR+CME ATDQLRTI EWP+KAMS ED M  QVIEL
Subjt:  SAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIEL

Query:  IKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRV
         ++I NLT+AEKSKC+M+VNQKVSL RSFIKM D MK AYC+V
Subjt:  IKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRV

TrEMBL top hitse value%identityAlignment
A0A5A7TYU4 Retrotransposon protein3.0e-102100Show/hide
Query:  MHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQ
        MHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQ
Subjt:  MHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQ

Query:  QFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGDP
        QFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGDP
Subjt:  QFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGDP

A0A5A7VAC3 Retrotransposon protein3.5e-7466.26Show/hide
Query:  MVGCSLTTTVIKSRIKLLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNM
        MV CSL TT+I+SRIKLLKKTFQAIAEMRG                             P AKRLLNK    YDALS+VF KD+ATGA AETFADIDSN+
Subjt:  MVGCSLTTTVIKSRIKLLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNM

Query:  SAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIEL
            DSVP +DGI+MEFP MC PRMNMSPKDMM GRS +SSD R  SS QKRK  MQQ ETYDLIR+CME ATDQLRTI EWP+KAMS ED M  QVIEL
Subjt:  SAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIEL

Query:  IKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRV
         ++I NLT+AEKSKC+M+VNQKVSL RSFIKM D MK AYC+V
Subjt:  IKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRV

A0A5D3B9T0 Retrotransposon protein3.7e-9275.83Show/hide
Query:  TVIKSRIKLLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVP
        TVI++RIKLLKKTFQAIAEMRGP GS FGWNDDVKCII ERDVFDHWV  HPAAK LLNKPF HYDAL                              VP
Subjt:  TVIKSRIKLLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVP

Query:  TKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLT
        TKD IDMEFP MCSPRMNMSP++MMGGRSGRS+DGR GS+ QKRKHSMQQFETYDLI ECMEAATDQLRTIAEWP+K MSWED MAAQVIELI+AI NLT
Subjt:  TKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLT

Query:  MAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGD
        MAEKSKCVMLVNQKVSLMRSFIKMPD MKA Y R+LLGG+
Subjt:  MAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGD

A0A5D3BUJ4 Retrotransposon protein3.5e-7466.26Show/hide
Query:  MVGCSLTTTVIKSRIKLLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNM
        MV CSL TT+I+SRIKLLKKTFQAIAEMRG                             P AKRLLNK    YDALS+VF KD+ATGA AETFADIDSN+
Subjt:  MVGCSLTTTVIKSRIKLLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNM

Query:  SAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIEL
            DSVP +DGI+MEFP MC PRMNMSPKDMM GRS +SSD R  SS QKRK  MQQ ETYDLIR+CME ATDQLRTI EWP+KAMS ED M  QVIEL
Subjt:  SAGYDSVPTKDGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIEL

Query:  IKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRV
         ++I NLT+AEKSKC+M+VNQKVSL RSFIKM D MK AYC+V
Subjt:  IKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRV

A0A5D3DLC6 Retrotransposon protein6.8e-7867.67Show/hide
Query:  LLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDME
        +LKKTFQAI EMRGP GS F WND +KCII ERDVFDHWV+ HP AK  LNKPF HYD LSYVF K +ATGAH+ETFADI SN+S   +S   +DGIDME
Subjt:  LLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDME

Query:  FPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCV
        FP MCSPRMNMSP+DM+GGRS RSSDGRTGSSEQKRK SMQQFET+DLI E                            QVIEL++ I NLTMAEKSKC+
Subjt:  FPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCV

Query:  MLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGD
        M++NQKVSLMRSFIKM D M AAYC+VLLGGD
Subjt:  MLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.2 unknown protein6.4e-0426.25Show/hide
Query:  VIKSRIKLLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAH
        V+K+R K L++ +  I  +    G  F W+     +I + D+++ ++Q HP A+    K    Y  L ++F K+ + G +
Subjt:  VIKSRIKLLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGGTTGCAGTTTGACGACGACCGTCATCAAAAGTCGAATAAAGTTGTTGAAGAAGACGTTTCAGGCCATTGCGGAGATGAGGGGCCCAACAGGTAGTTGCTTCGG
CTGGAACGATGACGTCAAGTGCATCATCATCGAGAGGGACGTGTTCGATCATTGGGTCCAGATGCATCCTGCAGCAAAAAGACTCCTGAACAAGCCATTTTTGCATTACG
ATGCACTGTCGTACGTGTTCGAGAAAGATCAAGCCACAGGGGCCCATGCAGAGACCTTTGCAGACATCGATTCGAACATGTCGGCCGGCTACGATAGTGTCCCCACAAAG
GATGGCATCGACATGGAGTTCCCCGTTATGTGCAGCCCGAGGATGAACATGTCCCCTAAGGACATGATGGGCGGTAGATCAGGTCGGTCGAGCGATGGTAGAACGGGCTC
TAGCGAACAGAAAAGGAAGCACTCCATGCAGCAATTTGAGACGTACGACCTGATTCGCGAATGTATGGAGGCTGCGACTGATCAGCTAAGAACCATTGCAGAATGGCCGA
AGAAAGCTATGAGCTGGGAGGACACGATGGCAGCGCAGGTGATTGAGCTTATAAAGGCCATCTCGAACCTTACTATGGCGGAGAAGAGTAAATGCGTCATGCTAGTGAAT
CAAAAGGTGTCGCTCATGAGAAGCTTCATCAAGATGCCCGATTTGATGAAGGCCGCTTACTGTAGGGTCCTCCTTGGCGGTGACCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGGTTGCAGTTTGACGACGACCGTCATCAAAAGTCGAATAAAGTTGTTGAAGAAGACGTTTCAGGCCATTGCGGAGATGAGGGGCCCAACAGGTAGTTGCTTCGG
CTGGAACGATGACGTCAAGTGCATCATCATCGAGAGGGACGTGTTCGATCATTGGGTCCAGATGCATCCTGCAGCAAAAAGACTCCTGAACAAGCCATTTTTGCATTACG
ATGCACTGTCGTACGTGTTCGAGAAAGATCAAGCCACAGGGGCCCATGCAGAGACCTTTGCAGACATCGATTCGAACATGTCGGCCGGCTACGATAGTGTCCCCACAAAG
GATGGCATCGACATGGAGTTCCCCGTTATGTGCAGCCCGAGGATGAACATGTCCCCTAAGGACATGATGGGCGGTAGATCAGGTCGGTCGAGCGATGGTAGAACGGGCTC
TAGCGAACAGAAAAGGAAGCACTCCATGCAGCAATTTGAGACGTACGACCTGATTCGCGAATGTATGGAGGCTGCGACTGATCAGCTAAGAACCATTGCAGAATGGCCGA
AGAAAGCTATGAGCTGGGAGGACACGATGGCAGCGCAGGTGATTGAGCTTATAAAGGCCATCTCGAACCTTACTATGGCGGAGAAGAGTAAATGCGTCATGCTAGTGAAT
CAAAAGGTGTCGCTCATGAGAAGCTTCATCAAGATGCCCGATTTGATGAAGGCCGCTTACTGTAGGGTCCTCCTTGGCGGTGACCCGTGA
Protein sequenceShow/hide protein sequence
MVGCSLTTTVIKSRIKLLKKTFQAIAEMRGPTGSCFGWNDDVKCIIIERDVFDHWVQMHPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTK
DGIDMEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVN
QKVSLMRSFIKMPDLMKAAYCRVLLGGDP