CuGenDBv2

Gene ID	IVF0013804
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr11:14318062..14318481
RNA-Seq Expression	IVF0013804
Synteny	IVF0013804
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040138.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.51e-63

81.06

Show/hide

Query:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA
        M +VDKQSMEET+YEILILNITDNVLR+VINENT YEI E L ALYDKKDLP KLY++EKLFSFK NQSKTLNENLDEFKKLTN+FNQ GEKL AESEAA
Subjt:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA

Query:  ILIKFLHDTYKEVKSALKYGRKLVSIDVVSIA
        I I  LHDTYKEVKS LKYGR+ V +DVV  A
Subjt:  ILIKFLHDTYKEVKSALKYGRKLVSIDVVSIA

KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

6.83e-48

65.12

Show/hide

Query:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA
        +TK +++++EE +Y  LI+NITDNVLR+VI E T +  WE LK+LY+KKDLP K+++KEKLFSFKKNQ+K L+ENLDEFKKLTN  NQ+GEKLGAE+EAA
Subjt:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA

Query:  ILIKFLHDTYKEVKSALKYGRKLVSIDVV
        ILI  +HDTYKEVK+ LKYGR+ ++++ V
Subjt:  ILIKFLHDTYKEVKSALKYGRKLVSIDVV

TYK27655.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.72e-60

78.79

Show/hide

Query:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA
        MT+VDKQSMEET+YEILILNITDNV R+VINENT YEIWE L ALYDKKDLP KLY+++  FS K NQSKTLNENLDEFKKLTN+FNQ GEKL AESEAA
Subjt:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA

Query:  ILIKFLHDTYKEVKSALKYGRKLVSIDVVSIA
        I I  LHDTYKEVKS LKYGR+ V +DVV  A
Subjt:  ILIKFLHDTYKEVKSALKYGRKLVSIDVVSIA

TYK27723.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.48e-45

62.12

Show/hide

Query:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA
        +TK +++++EE +Y  LI+NITDNVLR+VI E T +  WE LK+LY+KKDL  K++++EKLFSFK NQ+K L+ENLDEFKKLTN  NQ+ EKLGAESEAA
Subjt:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA

Query:  ILIKFLHDTYKEVKSALKYGRKLVSIDVVSIA
        ILI  +HDTYKEVK++LKYGR+ ++++ V  A
Subjt:  ILIKFLHDTYKEVKSALKYGRKLVSIDVVSIA

XP_038902453.1 uncharacterized protein LOC120089100 [Benincasa hispida]

2.53e-39

59.5

Show/hide

Query:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA
        +T   KQ+MEE +YE LILNI+++VLR+VI+ENT YE+WE LK LY KKD+P K YV+EKLFSFK N  K+L+ NLD+FKKL  +F Q G  LG + E  
Subjt:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA

Query:  ILIKFLHDTYKEVKSALKYGR
        I+I  LH++YK+VK+ LKYGR
Subjt:  ILIKFLHDTYKEVKSALKYGR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TAZ3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.4e-48

81.06

Show/hide

Query:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA
        M +VDKQSMEET+YEILILNITDNVLR+VINENT YEI E L ALYDKKDLP KLY++EKLFSFK NQSKTLNENLDEFKKLTN+FNQ GEKL AESEAA
Subjt:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA

Query:  ILIKFLHDTYKEVKSALKYGRKLVSIDVVSIA
        I I  LHDTYKEVKS LKYGR+ V +DVV  A
Subjt:  ILIKFLHDTYKEVKSALKYGRKLVSIDVVSIA

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-40

65.12

Show/hide

Query:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA
        +TK +++++EE +Y  LI+NITDNVLR+VI E T +  WE LK+LY+KKDLP K+++KEKLFSFKKNQ+K L+ENLDEFKKLTN  NQ+GEKLGAE+EAA
Subjt:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA

Query:  ILIKFLHDTYKEVKSALKYGRKLVSIDVV
        ILI  +HDTYKEVK+ LKYGR+ ++++ V
Subjt:  ILIKFLHDTYKEVKSALKYGRKLVSIDVV

A0A5A7UZ07 Retrotransposon protein, putative, Ty1-copia subclass

1.2e-31

60.17

Show/hide

Query:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA
        +TK +++++EE +Y  LI+NIT+NVLR++I E T +  WE LK+LY+KKDLP K+++++KLFSFK NQ+K L+E LDEFKKLTN  NQ+ EKL  ESEAA
Subjt:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA

Query:  ILIKFLHDTYKEVKSALK
        ILI  +HD YKEVK+ LK
Subjt:  ILIKFLHDTYKEVKSALK

A0A5D3DVM0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.8e-38

62.12

Show/hide

Query:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA
        +TK +++++EE +Y  LI+NITDNVLR+VI E T +  WE LK+LY+KKDL  K++++EKLFSFK NQ+K L+ENLDEFKKLTN  NQ+ EKLGAESEAA
Subjt:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA

Query:  ILIKFLHDTYKEVKSALKYGRKLVSIDVVSIA
        ILI  +HDTYKEVK++LKYGR+ ++++ V  A
Subjt:  ILIKFLHDTYKEVKSALKYGRKLVSIDVVSIA

A0A5D3DWH4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.8e-46

78.79

Show/hide

Query:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA
        MT+VDKQSMEET+YEILILNITDNV R+VINENT YEIWE L ALYDKKDLP KLY+++  FS K NQSKTLNENLDEFKKLTN+FNQ GEKL AESEAA
Subjt:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA

Query:  ILIKFLHDTYKEVKSALKYGRKLVSIDVVSIA
        I I  LHDTYKEVKS LKYGR+ V +DVV  A
Subjt:  ILIKFLHDTYKEVKSALKYGRKLVSIDVVSIA

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.0e-09

25.36

Show/hide

Query:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA
        M   D   ++E +   + L+++D+V+  +I+E+T   IW  L++LY  K L  KLY+K++L++   ++      +L+ F  L       G K+  E +A 
Subjt:  MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAA

Query:  ILIKFLHDTYKEVKSALKYGRKLVSIDVVSIACMESPK
        +L+  L  +Y  + + + +G+  + +  V+ A + + K
Subjt:  ILIKFLHDTYKEVKSALKYGRKLVSIDVVSIACMESPK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACTAAAGTAGATAAGCAAAGCATGGAGGAGACATCTTATGAAATCCTAATTCTCAACATTACAGATAATGTGTTAAGGAAAGTGATCAATGAAAATACAGTATATGA
AATATGGGAGACATTAAAGGCTCTCTATGACAAAAAGGACTTACCAAGAAAACTATATGTGAAGGAGAAACTTTTTTCTTTTAAAAAGAATCAGTCCAAGACTCTTAATG
AGAACTTGGATGAATTCAAGAAACTGACAAATGATTTCAATCAATCGGGAGAAAAACTTGGGGCTGAAAGCGAGGCTGCCATCTTAATAAAATTTTTACATGATACTTAC
AAAGAAGTGAAATCAGCTTTGAAATATGGAAGGAAACTAGTTTCAATAGATGTTGTGAGCATTGCGTGTATGGAAAGTCCAAAAGAATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MTKVDKQSMEETSYEILILNITDNVLRKVINENTVYEIWETLKALYDKKDLPRKLYVKEKLFSFKKNQSKTLNENLDEFKKLTNDFNQSGEKLGAESEAAILIKFLHDTY
KEVKSALKYGRKLVSIDVVSIACMESPKE

IVF0013804 (gene) of Melon (IVF77) v1 genome