; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0013813 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013813
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr04:19938238..19939482
RNA-Seq ExpressionIVF0013813
SyntenyIVF0013813
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033278.1 hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa]5.83e-5042.63Show/hide
Query:  LTCVG-VERMIIFIFSHALQLRESSSS-----------SSHMCC----------SREDLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDL
        L  +G VER+IIF     LQLRESSSS           SS MCC          SREDL  H L C+A ERIFIFIFS +LQPRGS S SS M C+++D 
Subjt:  LTCVG-VERMIIFIFSHALQLRESSSS-----------SSHMCC----------SREDLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDL

Query:  YLHL-LTCVAAERIFIFIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIIISIFSAAQDDHHLHLQCG
        +LH  L CVAA++IFIFIFSHV + RGSSSS SSL S                                                               
Subjt:  YLHL-LTCVAAERIFIFIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIIISIFSAAQDDHHLHLQCG

Query:  AVETIIISIFSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDA
                           + C  +E II+FIF+A Q RRSS SS +R +RD H +HL C   ET+I+FIF+A Q RRSSSSS MRR+RD H LHL C A
Subjt:  AVETIIISIFSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDA

Query:  IETIIIFIFNVA
         ET+I+FIF+ A
Subjt:  IETIIIFIFNVA

KAA0039121.1 hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa]1.91e-8852.82Show/hide
Query:  MCCSREDHHRHLLTCVGVERMIIFIFSHALQLRESSSSSSHMCCSREDLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAA
        +CC +EDHH HLLTCV  +R+IIFIFSH LQ R SSSSSSHMCCSRED +LHLLTC+A E+I IFIFSHVLQ RGS SSSSHM C+ +D YLHLLTC+A 
Subjt:  MCCSREDHHRHLLTCVGVERMIIFIFSHALQLRESSSSSSHMCCSREDLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAA

Query:  ERIFIFIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHL-QCGAVETIIISIF--SAAQDDHHLHL-----------
        ERI  F FSHVLQPRGSSSS                           SS M  S++ HHLHL  C  VE III IF  S +Q+D HLHL           
Subjt:  ERIFIFIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHL-QCGAVETIIISIF--SAAQDDHHLHL-----------

Query:  ---------------QCGAVETIIISIFSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSS-MRRNRDDH-HVHLQCDVIETIIMFIFNATQSRRSS
                          A ETII  IF+A +  D++    A E II+FIFNA Q R+ S SSS M  +R+DH H+HLQC              + RRSS
Subjt:  ---------------QCGAVETIIISIFSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSS-MRRNRDDH-HVHLQCDVIETIIMFIFNATQSRRSS

Query:  SSSSMRRNRDDHHLHLQCDAIE------TIIIFIFNV
        SSSSMR +R+DHHLHLQCDA+E      T+IIFIFNV
Subjt:  SSSSMRRNRDDHHLHLQCDAIE------TIIIFIFNV

KAA0047505.1 hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa]1.81e-6746.35Show/hide
Query:  TCVGVERMIIFIFSHALQLRESSSSSSHMCCSRE------------DLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAAE
        T VG   + IFIF+H LQ R SSSSSSH+CCSRE            D +LHL TC+A ERI IFIFSH+LQ R S  SSS+M  ++E  +L+LLTCVA E
Subjt:  TCVGVERMIIFIFSHALQLRESSSSSSHMCCSRE------------DLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAAE

Query:  RIFIF--IFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIII-------------SIFSAAQDDHHLHL
        +IFIF  IFSH LQPRG  SSLSS+                            RSR+ HHLHLQ  A E I I             S    +Q+DHHL L
Subjt:  RIFIF--IFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIII-------------SIFSAAQDDHHLHL

Query:  QCGAVETIIISIFSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQ
        QC           +      L LQ D  E II+FIFN  Q +RSS SSSM R+R+D H+HLQC   ETII+FI N                  DHHLHLQ
Subjt:  QCGAVETIIISIFSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQ

Query:  CDAIETIIIFIFNVA
        CDA E I+IF FN  
Subjt:  CDAIETIIIFIFNVA

TYK02186.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.32e-4452.78Show/hide
Query:  MCCSREDHHRHLLTCVGVERMIIFIFSHALQLRESSSSSSH-------------------------MCCSREDLYL---------HLLTCIATERIFIFI
        +CCSREDHH HLLTCV  ER IIFIFSH LQ R SSSSS H                         MCCS++DL+L         HLLTC A +RI IFI
Subjt:  MCCSREDHHRHLLTCVGVERMIIFIFSHALQLRESSSSSSH-------------------------MCCSREDLYL---------HLLTCIATERIFIFI

Query:  FSHVLQPRGSLSSSSHMYCNREDLYLH--LLTCVAAERI--FIFIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHL
        F+ +LQ RGSLSSSSH+YC+REDL+LH  LLTCV+AE+I  FIFIFSHVLQPRGSSSS                         SSSS M  SR   HLHL
Subjt:  FSHVLQPRGSLSSSSHMYCNREDLYLH--LLTCVAAERI--FIFIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHL

Query:  Q---CGAVETIIISIF
            C A E III IF
Subjt:  Q---CGAVETIIISIF

TYK26477.1 hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa]2.04e-4238.46Show/hide
Query:  ERMIIFIFSHALQLRESSSSSSHMCCSREDLYLHLLTCIA--TER-IFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAAERIFIFIFSHVLQPR
        ER+I FIFSH LQ RESSSSSSH+CCSRE+ + HLLTC+   T+R IFIFIF+ ++  R        ++     + + +   +A ER  IFIF  +LQ R
Subjt:  ERMIIFIFSHALQLRESSSSSSHMCCSREDLYLHLLTCIA--TER-IFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAAERIFIFIFSHVLQPR

Query:  GSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIIISIFSAAQDDHHLHLQCGAVETIIISIFSAAHRNDLHLQCDAIE
        GSSSS                             ++  S++ HH                      HHLHLQC A + III +F+      +        
Subjt:  GSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIIISIFSAAQDDHHLHLQCGAVETIIISIFSAAHRNDLHLQCDAIE

Query:  TIIMFIFNATQSRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDAIETIIIFIFNVA
         I +F+FN TQ R SS SSSM R+R+D H+HLQC   ETII+ I N                  DHHLHLQCDA E ++IF FN  
Subjt:  TIIMFIFNATQSRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDAIETIIIFIFNVA

TrEMBL top hitse value%identityAlignment
A0A5A7SRV7 Uncharacterized protein9.8e-3942.48Show/hide
Query:  VERMIIFIFSHALQLRES-----------SSSSSHMCC----------SREDLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHL-L
        VER+IIF     LQLRES           SSSSS MCC          SRED  LH L C+A ERIFIFIFS +LQPRGS S SS M C+++D +LH  L
Subjt:  VERMIIFIFSHALQLRES-----------SSSSSHMCC----------SREDLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHL-L

Query:  TCVAAERIFIFIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIIISIFSAAQDDHHLHLQCGAVETII
         CVAA++IFIFIFSHV + RGSSSS SSL S                                                                     
Subjt:  TCVAAERIFIFIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIIISIFSAAQDDHHLHLQCGAVETII

Query:  ISIFSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDAIETIII
                          +E II+FIF+A Q RRSS SS +R +RD H +HL C   ET+I+FIF+A Q RRSSSSS MRR+RD H LHL C A ET+I+
Subjt:  ISIFSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDAIETIII

Query:  FIFNVA
        FIF+ A
Subjt:  FIFNVA

A0A5A7TBX4 Uncharacterized protein5.3e-6955.48Show/hide
Query:  MCCSREDHHRHLLTCVGVERMIIFIFSHALQLRESSSSSSHMCCSREDLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAA
        +CC +EDHH HLLTCV  +R+IIFIFSH LQ R SSSSSSHMCCSRED +LHLLTC+A E+I IFIFSHVLQ RGS SSSSHM C+ +D YLHLLTC+A 
Subjt:  MCCSREDHHRHLLTCVGVERMIIFIFSHALQLRESSSSSSHMCCSREDLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAA

Query:  ERIFIFIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHL-QCGAVETIIISIFS-AAQDDHHLHLQCGAVETIIISI
        ERI  F FSHVLQPRGSSSS S +  S       +   ++          M RS++  HLHL  C A + III IFS   Q          A ETII  I
Subjt:  ERIFIFIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHL-QCGAVETIIISIFS-AAQDDHHLHLQCGAVETIIISI

Query:  FSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSS-MRRNRDDH-HVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDAI------
        F+A +  D+    +A E II+FIFNA Q R+ S SSS M  +R+DH H+HLQC              + RRSSSSSSMR +R+DHHLHLQCDA+      
Subjt:  FSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSS-MRRNRDDH-HVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDAI------

Query:  ETIIIFIFNV
        ET+IIFIFNV
Subjt:  ETIIIFIFNV

A0A5A7U1J1 Uncharacterized protein6.3e-5446.65Show/hide
Query:  TCVGVERMIIFIFSHALQLRESSSSSSHMCCS------------REDLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAAE
        T VG   + IFIF+H LQ R SSSSSSH+CCS            RED +LHL TC+A ERI IFIFSH+LQ R S  SSS+M  ++E  +L+LLTCVA E
Subjt:  TCVGVERMIIFIFSHALQLRESSSSSSHMCCS------------REDLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAAE

Query:  RIFI--FIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIII-------------SIFSAAQDDHHLHL
        +IFI  FIFSH LQPRG  SSLSS+                            RSR+ HHLHLQ  A E I I             S    +Q+DHHL L
Subjt:  RIFI--FIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIII-------------SIFSAAQDDHHLHL

Query:  QCGAVETIIISIFSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQ
        QC           +      L LQ D  E II+FIFN  Q +RSS SSSM R+R+D H+HLQC   ETII+FI N                  DHHLHLQ
Subjt:  QCGAVETIIISIFSAAHRNDLHLQCDAIETIIMFIFNATQSRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQ

Query:  CDAIETIIIFIFN
        CDA E I+IF FN
Subjt:  CDAIETIIIFIFN

A0A5D3BVC5 Retrotransposon gag protein8.3e-3852.78Show/hide
Query:  MCCSREDHHRHLLTCVGVERMIIFIFSHALQLRESSSSSSH-------------------------MCCSREDL---------YLHLLTCIATERIFIFI
        +CCSREDHH HLLTCV  ER IIFIFSH LQ R SSSSS H                         MCCS++DL         +LHLLTC A +RI IFI
Subjt:  MCCSREDHHRHLLTCVGVERMIIFIFSHALQLRESSSSSSH-------------------------MCCSREDL---------YLHLLTCIATERIFIFI

Query:  FSHVLQPRGSLSSSSHMYCNREDLYL--HLLTCVAAER--IFIFIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLH-
        F ++LQ RGSLSSSSH+YC+REDL+L  HLLTCV+AE+  IFIFIFSHVLQPRG                         SSSSSSSS M  SR   HLH 
Subjt:  FSHVLQPRGSLSSSSHMYCNREDLYL--HLLTCVAAER--IFIFIFSHVLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLH-

Query:  --LQCGAVETIIISIF
          L C A E III IF
Subjt:  --LQCGAVETIIISIF

A0A5D3DRX7 Uncharacterized protein1.6e-3340.07Show/hide
Query:  TCVGVERMIIFIFSHALQLRESSSSSSHMCCSREDLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAAE---RIFIFIFSH
        T VG   + IFIF+H LQ R SSSSSSH+                 ERI  FIFSHVLQ R S SSSSH+ C+RE+ + HLLTCV A+    IFIFIF+ 
Subjt:  TCVGVERMIIFIFSHALQLRESSSSSSHMCCSREDLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAAE---RIFIFIFSH

Query:  VLQPR-------GSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIIISIFSAAQDDHHLHLQCGAVETIIISIFSAAH
        ++  R        +   +    + ++  +    FK++    SSSS+      DHH                       HHLHLQC A + III +F+   
Subjt:  VLQPR-------GSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIIISIFSAAQDDHHLHLQCGAVETIIISIFSAAH

Query:  RNDLHLQCDAIETII-MFIFNATQSRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDAIETIIIFIFN
                 A E II +F+FN TQ R SS SSSM R+R+D H+HLQC   ETII+ I N                  DHHLHLQCDA E ++IF FN
Subjt:  RNDLHLQCDAIETII-MFIFNATQSRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDAIETIIIFIFN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTGCAGCCGAGAGGATCATCATCGTCATCTTCTCACATGCGTTGGAGTCGAGAGGATGATCATCTTCATCTTCTCACATGCGTTGCAATTGAGAGAATCTTCATC
TTCATCTTCTCACATGTGTTGCAGCCGAGAAGATCTTTATCTTCATCTTCTCACATGTATTGCAACCGAGAGGATCTTTATCTTCATCTTCTCACATGTATTGCAACCGA
GAGGATCTTTATCTTCATCTTCTCACATGTATTGCAACCGAGAGGATCTTTATCTTCATCTTCTCACATGCGTTGCAGCTGAGAGGATCTTTATCTTCATCTTCTCACAT
GTGTTGCAGCCAAGAGGATCATCCTCTTCTTTATCTTCATTAGAATCATCTTCATCTTCATCTTCATCTTCAATACGGTTTAAGCTGATAGAATCATCTTCATCTTCATC
TTCATCTTCAATGCGGCGTAGTAGAGACCATCATCATCTCCATCTTCAGTGCGGCGCAGTAGAGACGATCATCATCTCCATCTTCAGTGCGGCGCAAGACGATCATCATC
TCCATCTTCAGTGCGGCGCAGTAGAGACGATCATCATCTCCATCTTCAGTGCGGCGCACCGAAACGATCTCCATCTTCAATGCGACGCAATCGAGACGATCATCATGTTC
ATCTTCAATGCGACGCAATCGAGACGATCATCATGTTCATCTTCAATGCGACGTAATCGAGACGATCATCATGTTCATCTTCAATGCGACGTAATCGAGACGATCATCAT
GTTCATCTTCAATGCGACGCAATCGAGACGATCATCATCTTCATCTTCAATGCGACGCAATCGAGACGATCATCATCTCCATCTTCAATGCGACGCAATCGAGACGATCA
TCATTTTCATCTTCAATGTGGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTTGCAGCCGAGAGGATCATCATCGTCATCTTCTCACATGCGTTGGAGTCGAGAGGATGATCATCTTCATCTTCTCACATGCGTTGCAATTGAGAGAATCTTCATC
TTCATCTTCTCACATGTGTTGCAGCCGAGAAGATCTTTATCTTCATCTTCTCACATGTATTGCAACCGAGAGGATCTTTATCTTCATCTTCTCACATGTATTGCAACCGA
GAGGATCTTTATCTTCATCTTCTCACATGTATTGCAACCGAGAGGATCTTTATCTTCATCTTCTCACATGCGTTGCAGCTGAGAGGATCTTTATCTTCATCTTCTCACAT
GTGTTGCAGCCAAGAGGATCATCCTCTTCTTTATCTTCATTAGAATCATCTTCATCTTCATCTTCATCTTCAATACGGTTTAAGCTGATAGAATCATCTTCATCTTCATC
TTCATCTTCAATGCGGCGTAGTAGAGACCATCATCATCTCCATCTTCAGTGCGGCGCAGTAGAGACGATCATCATCTCCATCTTCAGTGCGGCGCAAGACGATCATCATC
TCCATCTTCAGTGCGGCGCAGTAGAGACGATCATCATCTCCATCTTCAGTGCGGCGCACCGAAACGATCTCCATCTTCAATGCGACGCAATCGAGACGATCATCATGTTC
ATCTTCAATGCGACGCAATCGAGACGATCATCATGTTCATCTTCAATGCGACGTAATCGAGACGATCATCATGTTCATCTTCAATGCGACGTAATCGAGACGATCATCAT
GTTCATCTTCAATGCGACGCAATCGAGACGATCATCATCTTCATCTTCAATGCGACGCAATCGAGACGATCATCATCTCCATCTTCAATGCGACGCAATCGAGACGATCA
TCATTTTCATCTTCAATGTGGCGTAG
Protein sequenceShow/hide protein sequence
MCCSREDHHRHLLTCVGVERMIIFIFSHALQLRESSSSSSHMCCSREDLYLHLLTCIATERIFIFIFSHVLQPRGSLSSSSHMYCNREDLYLHLLTCVAAERIFIFIFSH
VLQPRGSSSSLSSLESSSSSSSSSIRFKLIESSSSSSSSSMRRSRDHHHLHLQCGAVETIIISIFSAAQDDHHLHLQCGAVETIIISIFSAAHRNDLHLQCDAIETIIMF
IFNATQSRRSSCSSSMRRNRDDHHVHLQCDVIETIIMFIFNATQSRRSSSSSSMRRNRDDHHLHLQCDAIETIIIFIFNVA