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IVF0013817 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013817
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPolyprotein
Genome locationchr11:15705553..15706053
RNA-Seq ExpressionIVF0013817
SyntenyIVF0013817
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047025.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.24e-6697.22Show/hide
Query:  VECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFDKLPS
        VECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSILTQEGHPIAYESHK NNTERRYTV EKEILVVGHCLRALRQYLLGSPFVVK DKLPS
Subjt:  VECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFDKLPS

Query:  VTSSANLS
        VTSSANLS
Subjt:  VTSSANLS

TYK04903.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.02e-5970.68Show/hide
Query:  MDEEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGS
        M++ K + +KEW A TS+ +L  FLGLANYY  FIE FLRR   L ELLKKGTTWRWPVECQT FD+LKVTMTRG + GLVDVSKPF+VE D SDF  G 
Subjt:  MDEEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGS

Query:  ILTQEGHPIAYESHKSNNTERRYTVFEKEILVV
        +LTQEGHPIAY+SHK NN ERRYTV +KE+LVV
Subjt:  ILTQEGHPIAYESHKSNNTERRYTVFEKEILVV

TYK13522.1 polyprotein [Cucumis melo var. makuwa]9.81e-113100Show/hide
Query:  MKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSILTQEGHP
        MKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSILTQEGHP
Subjt:  MKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSILTQEGHP

Query:  IAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFDKLPSVTSSANLS
        IAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFDKLPSVTSSANLS
Subjt:  IAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFDKLPSVTSSANLS

XP_022975516.1 uncharacterized protein LOC111474945, partial [Cucurbita maxima]8.31e-6065.58Show/hide
Query:  MDEEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGS
        MD +K++ ++EW   TS+  L SFLGLANYYR F+E F RRA PL ELLKK  TW W  +CQ  F+DLK TMTRGPV GLVDV+KPF +E D SDF LG 
Subjt:  MDEEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGS

Query:  ILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFD
        +L QEGHPIA+ES K N+ ERRYTV EKE+L V HCLR  RQYLLGS FVVK D
Subjt:  ILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFD

XP_023524533.1 uncharacterized protein LOC111788429 [Cucurbita pepo subsp. pepo]3.93e-5965.58Show/hide
Query:  MDEEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGS
        MD +K++ ++EW   TS+ +L SFLGLANYYR F+E F RRA PL ELLKK   W W  +CQ  F++LK TMTRGPV GLVDV+KPF VE D SDF LG 
Subjt:  MDEEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGS

Query:  ILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFD
        +L QEGHPIAYES K N+ ERRYTV EKE+L V HCLR  RQYLLGS FVVK D
Subjt:  ILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFD

TrEMBL top hitse value%identityAlignment
A0A5A7U049 Putative mitochondrial protein1.6e-5197.22Show/hide
Query:  VECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFDKLPS
        VECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSILTQEGHPIAYESHK NNTERRYTV EKEILVVGHCLRALRQYLLGSPFVVK DKLPS
Subjt:  VECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFDKLPS

Query:  VTSSANLS
        VTSSANLS
Subjt:  VTSSANLS

A0A5D3CQ59 Polyprotein7.7e-86100Show/hide
Query:  MKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSILTQEGHP
        MKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSILTQEGHP
Subjt:  MKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSILTQEGHP

Query:  IAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFDKLPSVTSSANLS
        IAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFDKLPSVTSSANLS
Subjt:  IAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFDKLPSVTSSANLS

A0A6J1D906 Reverse transcriptase2.0e-4964.29Show/hide
Query:  MDEEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGS
        MD +K++ ++EW   TS+I+L SFLGLANYYR FIE F RRATP+ ELLKKG TW W  E Q  F+DLK  M +GPV GL DV+KPF VE D SD+ LG 
Subjt:  MDEEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGS

Query:  ILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFD
        +L Q+ HPI YES K NN ERRYTV EKE+L V HCLR+ RQYLLGS FVVK D
Subjt:  ILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFD

A0A6J1IDF7 uncharacterized protein LOC1114742154.1e-4762.34Show/hide
Query:  MDEEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGS
        MD +K++ ++EW   TS+  L SFLGLANYYR F+E F RRA PL ELLKK   W W  +CQ  F+DLK TM  GPV GLVDV+KPF +E D SDF LG 
Subjt:  MDEEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGS

Query:  ILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFD
        +L QEGHPIA+ES K N+ ERRY V EK++L V HCLR  RQYLLGS FVVK D
Subjt:  ILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFD

A0A6J1IEF9 uncharacterized protein LOC1114749456.1e-5165.58Show/hide
Query:  MDEEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGS
        MD +K++ ++EW   TS+  L SFLGLANYYR F+E F RRA PL ELLKK  TW W  +CQ  F+DLK TMTRGPV GLVDV+KPF +E D SDF LG 
Subjt:  MDEEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGS

Query:  ILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFD
        +L QEGHPIA+ES K N+ ERRYTV EKE+L V HCLR  RQYLLGS FVVK D
Subjt:  ILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFD

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.2e-2034.81Show/hide
Query:  EKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKG----TTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLG
        EK++ ++++   T   ++ +FLGL  YYR FI  F   A P+ + LKK     TT     E  + F  LK  ++  P+  + D +K F +  D SD  LG
Subjt:  EKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKG----TTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLG

Query:  SILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFDKLP
        ++L+Q+GHP++Y S   N  E  Y+  EKE+L +    +  R YLLG  F +  D  P
Subjt:  SILTQEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFDKLP

P0CT34 Transposon Tf2-1 polyprotein1.4e-1531.25Show/hide
Query:  EEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRW-PVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSI
        +E +  + +W    +  +L  FLG  NY R FI +  +   PL  LLKK   W+W P + Q + +++K  +   PV    D SK  ++E D SD  +G++
Subjt:  EEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRW-PVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSI

Query:  LTQEG-----HPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGS--PFVVKFD
        L+Q+      +P+ Y S K +  +  Y+V +KE+L +   L+  R YL  +  PF +  D
Subjt:  LTQEG-----HPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGS--PFVVKFD

P0CT41 Transposon Tf2-12 polyprotein1.4e-1531.25Show/hide
Query:  EEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRW-PVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSI
        +E +  + +W    +  +L  FLG  NY R FI +  +   PL  LLKK   W+W P + Q + +++K  +   PV    D SK  ++E D SD  +G++
Subjt:  EEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRW-PVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSI

Query:  LTQEG-----HPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGS--PFVVKFD
        L+Q+      +P+ Y S K +  +  Y+V +KE+L +   L+  R YL  +  PF +  D
Subjt:  LTQEG-----HPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGS--PFVVKFD

P20825 Retrovirus-related Pol polyprotein from transposon 2979.2e-2034.42Show/hide
Query:  KLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTW-RWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSILT
        K++ +  +   T   ++ +FLGL  YYR FI  +   A P+   LKK T      +E    F+ LK  + R P+  L D  K F++  D S+  LG++L+
Subjt:  KLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTW-RWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSILT

Query:  QEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFDKLP
        Q GHPI++ S   N+ E  Y+  EKE+L +    +  R YLLG  F++  D  P
Subjt:  QEGHPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFDKLP

Q9UR07 Transposon Tf2-11 polyprotein1.4e-1531.25Show/hide
Query:  EEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRW-PVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSI
        +E +  + +W    +  +L  FLG  NY R FI +  +   PL  LLKK   W+W P + Q + +++K  +   PV    D SK  ++E D SD  +G++
Subjt:  EEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRW-PVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSI

Query:  LTQEG-----HPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGS--PFVVKFD
        L+Q+      +P+ Y S K +  +  Y+V +KE+L +   L+  R YL  +  PF +  D
Subjt:  LTQEG-----HPIAYESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGS--PFVVKFD

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein2.6e-0935.56Show/hide
Query:  DEEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEI
        D  KL+ M  W    +  +L  FLGL  YYR F++ + +   PL ELLKK +  +W       F  LK  +T  PV  L D+  PF+  +
Subjt:  DEEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGAAGAAAAGTTGCAAACCATGAAGGAGTGGATAGCCTCAACTTCTTTAATAAAACTACATTCCTTCCTTGGATTAGCTAACTACTATCGCTGGTTCATTGAAGA
ATTCTTAAGAAGAGCTACACCATTGATTGAGTTGTTGAAGAAAGGTACGACTTGGAGATGGCCAGTCGAATGTCAAACTGTGTTTGACGACTTAAAGGTGACAATGACGA
GGGGTCCTGTCCACGGATTAGTGGACGTGTCTAAGCCATTTATAGTGGAGATCGACACATCAGACTTTACCCTTGGGAGCATCCTTACCCAAGAGGGTCATCCAATAGCC
TACGAGAGTCATAAGTCTAACAACACTGAGAGGAGGTATACTGTCTTCGAGAAGGAAATCCTTGTTGTGGGCCATTGTTTGAGGGCATTGAGGCAATATTTACTGGGATC
ACCATTTGTAGTGAAATTTGACAAATTGCCATCCGTCACTTCTTCAGCCAACCTAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGAAGAAAAGTTGCAAACCATGAAGGAGTGGATAGCCTCAACTTCTTTAATAAAACTACATTCCTTCCTTGGATTAGCTAACTACTATCGCTGGTTCATTGAAGA
ATTCTTAAGAAGAGCTACACCATTGATTGAGTTGTTGAAGAAAGGTACGACTTGGAGATGGCCAGTCGAATGTCAAACTGTGTTTGACGACTTAAAGGTGACAATGACGA
GGGGTCCTGTCCACGGATTAGTGGACGTGTCTAAGCCATTTATAGTGGAGATCGACACATCAGACTTTACCCTTGGGAGCATCCTTACCCAAGAGGGTCATCCAATAGCC
TACGAGAGTCATAAGTCTAACAACACTGAGAGGAGGTATACTGTCTTCGAGAAGGAAATCCTTGTTGTGGGCCATTGTTTGAGGGCATTGAGGCAATATTTACTGGGATC
ACCATTTGTAGTGAAATTTGACAAATTGCCATCCGTCACTTCTTCAGCCAACCTAAGTTAA
Protein sequenceShow/hide protein sequence
MDEEKLQTMKEWIASTSLIKLHSFLGLANYYRWFIEEFLRRATPLIELLKKGTTWRWPVECQTVFDDLKVTMTRGPVHGLVDVSKPFIVEIDTSDFTLGSILTQEGHPIA
YESHKSNNTERRYTVFEKEILVVGHCLRALRQYLLGSPFVVKFDKLPSVTSSANLS