; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0013835 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013835
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr11:18001045..18001644
RNA-Seq ExpressionIVF0013835
SyntenyIVF0013835
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0046872 - metal ion binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048148.1 retrotransposon protein [Cucumis melo var. makuwa]1.43e-2863.95Show/hide
Query:  PAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDCRS
        PAA  LLNKPF  YD L YVF KD+ATGAHAETF DI SN+  G   V  +DG+DMEFP M +P MNMSP+DMMG R G+S D R+
Subjt:  PAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDCRS

KAA0055070.1 retrotransposon protein [Cucumis melo var. makuwa]9.23e-2760.23Show/hide
Query:  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDCRS
        T P A   LNKPFP YD L YVF K RATGAH+ETF DI SNV   +     EDG+DMEFP M +P MNMSPEDM+G R  +S D R+
Subjt:  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDCRS

KAA0060069.1 retrotransposon protein [Cucumis melo var. makuwa]2.07e-3167.71Show/hide
Query:  SDNGTFRPDYLVQLTRPAAN---DLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGAR
        SDN TFRP YL QL R        LLNKPFP YDEL YVF KDR TGA  E F DI SNVPG S GVQ EDGLDMEFPTM +  MN+S ED MGAR
Subjt:  SDNGTFRPDYLVQLTRPAAN---DLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGAR

KAA0062004.1 retrotransposon protein [Cucumis melo var. makuwa]6.54e-5196.34Show/hide
Query:  ANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDC
         NDLLNKPFPLYDELLYVF KDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMG RLGKSIDC
Subjt:  ANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDC

TYK05020.1 retrotransposon protein [Cucumis melo var. makuwa]3.20e-56100Show/hide
Query:  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDC
        TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDC
Subjt:  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDC

TrEMBL top hitse value%identityAlignment
A0A5A7TYU4 Retrotransposon protein8.6e-2263.95Show/hide
Query:  PAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDCRS
        PAA  LLNKPF  YD L YVF KD+ATGAHAETF DI SN+  G   V  +DG+DMEFP M +P MNMSP+DMMG R G+S D R+
Subjt:  PAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDCRS

A0A5A7V2R5 Retrotransposon protein1.4e-2467.71Show/hide
Query:  SDNGTFRPDYLVQLTRPAAN---DLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGAR
        SDN TFRP YL QL R        LLNKPFP YDEL YVF KDR TGA  E F DI SNVPG S GVQ EDGLDMEFPTM +  MN+S ED MGAR
Subjt:  SDNGTFRPDYLVQLTRPAAN---DLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGAR

A0A5A7V3X7 Retrotransposon protein1.3e-3897.53Show/hide
Query:  NDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDC
        NDLLNKPFPLYDELLYVF KDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMG RLGKSIDC
Subjt:  NDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDC

A0A5D3C0W3 Retrotransposon protein8.8e-43100Show/hide
Query:  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDC
        TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDC
Subjt:  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDC

A0A5D3DLC6 Retrotransposon protein1.6e-2060.23Show/hide
Query:  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDCRS
        T P A   LNKPFP YD L YVF K RATGAH+ETF DI SNV   +     EDG+DMEFP M +P MNMSPEDM+G R  +S D R+
Subjt:  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDCRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGACAATGGGACCTTCAGACCCGATTACCTAGTCCAATTGACGCGTCCTGCAGCCAACGACCTACTAAACAAGCCTTTTCCGCTTTATGACGAGCTATTGTATGT
CTTTAGTAAAGATCGTGCGACGGGGGCCCATGCAGAGACATTCGTTGATATCAGGTCCAATGTGCCAGGGGGAAGCAAAGGAGTTCAACAAGAAGATGGGCTAGATATGG
AGTTCCCTACTATGTACAACCCAGGAATGAACATGTCGCCTGAAGACATGATGGGCGCACGACTTGGTAAGTCCATCGACTGTAGGTCGGTTCTAGTAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGACAATGGGACCTTCAGACCCGATTACCTAGTCCAATTGACGCGTCCTGCAGCCAACGACCTACTAAACAAGCCTTTTCCGCTTTATGACGAGCTATTGTATGT
CTTTAGTAAAGATCGTGCGACGGGGGCCCATGCAGAGACATTCGTTGATATCAGGTCCAATGTGCCAGGGGGAAGCAAAGGAGTTCAACAAGAAGATGGGCTAGATATGG
AGTTCCCTACTATGTACAACCCAGGAATGAACATGTCGCCTGAAGACATGATGGGCGCACGACTTGGTAAGTCCATCGACTGTAGGTCGGTTCTAGTAGATTGA
Protein sequenceShow/hide protein sequence
MSDNGTFRPDYLVQLTRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDCRSVLVD