CuGenDBv2

Gene ID	IVF0013848
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Genome location	chr05:14657854..14658333
RNA-Seq Expression	IVF0013848
Synteny	IVF0013848
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026296.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

3.19e-101

94.34

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Query:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ
        MAPYEALYGRPC+TPVCWNEVGERKLVG ELVQITTNNIKLIRENLR AQDRQK YADKRRRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIG YQ
Subjt:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ

Query:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV
        I+ERVG AAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLSYVEEPV
Subjt:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV

KAA0039736.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

1.15e-100

94.34

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Query:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ
        MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQITTNNIKLIRENLR AQDRQK YADKRRRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIG YQ
Subjt:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ

Query:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV
        I+ERVG AAYRLELPI+LARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLSYVEEPV
Subjt:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV

KAA0046281.1 DNA/RNA polymerase superfamily protein [Cucumis melo var. makuwa]

1.51e-100

93.08

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Query:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ
        MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQITTNNIKLIRENLR AQDRQK YADKRRRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYI  YQ
Subjt:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ

Query:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV
        I+ERVG AAYRLELPIELARI+DVFHVSMLRKYIPDPSHVLQ+QPVELKEDLSYVEEP+
Subjt:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV

KAA0051020.1 reverse transcriptase [Cucumis melo var. makuwa]

1.63e-100

94.34

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Query:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ
        MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQITT+NIKLIRENLR AQDRQK YADKRRRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIG YQ
Subjt:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ

Query:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV
        I+ERVG AAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLSYVEEPV
Subjt:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV

KAA0065718.1 DNA/RNA polymerase superfamily protein [Cucumis melo var. makuwa]

6.40e-103

94.97

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Query:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ
        MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQ TTNNIKLIRENLR AQDRQK YADKRRRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIG YQ
Subjt:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ

Query:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV
        I+ERVG AAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV
Subjt:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SX06 DNA/RNA polymerases superfamily protein

4.6e-80

94.97

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Query:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ
        MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQITTNNIKLIRENLR AQDRQK Y DKRRRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIGSYQ
Subjt:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ

Query:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV
        I+ERVG AAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQP+ELKEDLSYVEEPV
Subjt:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV

A0A5A7U2V7 Reverse transcriptase

6.0e-80

94.97

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Query:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ
        MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQITTNNIKLIRENLR AQDRQK YADKRRRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIG YQ
Subjt:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ

Query:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV
        I+ERVG AAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLSYVEEPV
Subjt:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV

A0A5A7V8M7 Putative Retrotransposon protein

9.0e-84

99.37

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Query:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ
        MAPYEALYGRP RTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ
Subjt:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ

Query:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV
        ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV
Subjt:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV

A0A5D3BHI1 Reverse transcriptase

6.0e-80

94.97

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Query:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ
        MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQITTNNIKLIRENLR AQDRQK YADKRRRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIG YQ
Subjt:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ

Query:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV
        I+ERVG AAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLSYVEEPV
Subjt:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV

A0A5D3BS67 Reverse transcriptase

6.0e-80

94.97

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Query:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ
        MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQITTNNIKLIRENLR AQDRQK YADKRRRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIG YQ
Subjt:  MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQ

Query:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV
        I+ERVG AAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLSYVEEPV
Subjt:  ISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G42190.1 GAG/POL/ENV polyprotein

2.4e-04

45.65

Show/hide

Query:  YRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYV
        Y+L+LP  +   H VFHVSMLRK I    +V+ E P +L E++  V
Subjt:  YRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYV

Sequences

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CDS sequence

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ATGGCACCATATGAAGCCTTATACGGGAGACCATGCAGAACTCCTGTGTGCTGGAATGAAGTGGGAGAGCGGAAGTTAGTAGGTCATGAGTTGGTTCAGATTACGACAAA
CAATATTAAGTTGATCAGAGAAAATCTGAGGACAGCCCAAGATCGACAGAAAGTTTATGCGGATAAGCGACGAAGAAACCTAGAATTCCAAGTTGGAGATCAAGTTTTCT
TGAAATTATCTCCATGGCGAAGTGTTATTCGTTTCGGAAGAAAAGGTAAGTTAAGTCCAAGATATATTGGGTCATATCAGATATCAGAACGAGTGGGACTAGCAGCGTAT
AGACTTGAGTTGCCAATAGAACTTGCACGAATACATGATGTTTTCCATGTATCCATGTTAAGAAAATATATACCAGATCCATCACATGTGTTGCAAGAGCAACCCGTTGA
ATTAAAAGAAGATTTGAGTTATGTTGAAGAACCAGTTTAG

mRNA sequence

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Protein sequence

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MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQISERVGLAAY
RLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV

IVF0013848 (gene) of Melon (IVF77) v1 genome