CuGenDBv2

Gene ID	IVF0013864
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	30S ribosomal protein S16, chloroplastic
Genome location	tig00001495:42710..43809
RNA-Seq Expression	IVF0013864
Synteny	IVF0013864
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

YP_009004027.1 ribosomal protein S16 [Cucumis hystrix]

5.37e-33

74.39

Show/hide

Query:  MVKLRLKRCGRKQL--------------------GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ+                    GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQL--------------------GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_009526284.1 ribosomal protein S16 [Hemsleya lijiangensis]

1.15e-32

72.62

Show/hide

Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_009674373.1 ribosomal protein S16 [Siraitia grosvenorii]

1.15e-32

72.62

Show/hide

Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_009751467.1 ribosomal protein S16 [Thladiantha dubia]

1.15e-32

72.62

Show/hide

Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_009752648.1 ribosomal protein S16 [Ampelosycios humblotii]

1.15e-32

72.62

Show/hide

Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

TrEMBL top hits

e value

%identity

Alignment

A0A218KG12 30S ribosomal protein S16, chloroplastic

7.0e-24

72.62

Show/hide

Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

A0A343UM14 30S ribosomal protein S16, chloroplastic

4.1e-24

74.39

Show/hide

Query:  MVKLRLKRCGRKQ--------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                    +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ--------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

A0A515BLF3 30S ribosomal protein S16, chloroplastic

4.1e-24

74.39

Show/hide

Query:  MVKLRLKRCGRKQ--------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                    +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ--------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

A0A6H0ETM9 30S ribosomal protein S16, chloroplastic

7.0e-24

72.62

Show/hide

Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

W8E1Y8 Ribosomal protein S16

4.1e-24

74.39

Show/hide

Query:  MVKLRLKRCGRKQ--------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                    +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ--------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

SwissProt top hits

e value

%identity

Alignment

A0ZZ17 30S ribosomal protein S16, chloroplastic

5.1e-24

69.05

Show/hide

Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPI NQTYLNVPAILYFLEKGAQPT TVHDILKKAGVFTEL LNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q09X35 30S ribosomal protein S16, chloroplastic

9.7e-23

66.27

Show/hide

Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLN
        MVKLRLKRCGR+Q                      +GFYDPIKNQTYLNVP ILYFLEKGAQPTGTVHDI KKAGVF EL LN
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLN

Q0ZJ38 30S ribosomal protein S16, chloroplastic

3.3e-23

67.86

Show/hide

Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPIKNQTY NVPAILYFLEKGAQPTGTVHDI KKA VFTEL LNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q2L8Y7 30S ribosomal protein S16, chloroplastic

5.1e-24

69.05

Show/hide

Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                      +GFYDPI NQTYLNVPAILYFLEKGAQPT TVHDILKKAGVFTEL LNQ
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q2QDA6 30S ribosomal protein S16, chloroplastic

2.5e-26

71.76

Show/hide

Query:  MVKLRLKRCGRKQ-----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        MVKLRLKRCGRKQ                       +GFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  MVKLRLKRCGRKQ-----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G34620.1 small subunit ribosomal protein 16

7.9e-04

43.48

Show/hide

Query:  LGFYDPIK-----NQTYLNVPAILYFLEKGAQPTGTVHDILKKAGV
        LGFYDP++     ++  L    I Y+L  GAQPT TV  +L +AG+
Subjt:  LGFYDPIK-----NQTYLNVPAILYFLEKGAQPTGTVHDILKKAGV

ATCG00050.1 ribosomal protein S16

4.3e-18

58.23

Show/hide

Query:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTE
        MVKLRLKRCGRKQ                      +GFYDPI NQT+LN+ AIL FL+KGAQPT T HDI KKAG+FTE
Subjt:  MVKLRLKRCGRKQ----------------------LGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAACTGGGTTTTTATGATCCGATAAAGAATCAAACCTATTTAAATGTTCCTGCTATTCTATATTTCCTTGAAAA
GGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGTGTTTTTACGGAACTTCACCTTAATCAATAA

mRNA sequence

Show/hide mRNA sequence

ATGGTAAAACTTCGTTTAAAACGATGTGGTAGAAAGCAACTGGGTTTTTATGATCCGATAAAGAATCAAACCTATTTAAATGTTCCTGCTATTCTATATTTCCTTGAAAA
GGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGTGTTTTTACGGAACTTCACCTTAATCAATAA

Protein sequence

Show/hide protein sequence

MVKLRLKRCGRKQLGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

IVF0013864 (gene) of Melon (IVF77) v1 genome