| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0039984.1 RNA polymerase sigma factor sigB isoform X1 [Cucumis melo var. makuwa] | 0.0 | 97.63 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Subjt: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Query: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
Subjt: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
Query: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Subjt: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Query: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRK+ + KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Query: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Subjt: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Query: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMG
MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMG
Subjt: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMG
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| XP_004154029.1 RNA polymerase sigma factor sigB [Cucumis sativus] | 0.0 | 95.17 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
MSCLLPQFKCHPETFSIQFKTAAN SHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTL+VDRLKLPPFDTNTDSVSVERLRSYLGAVES
Subjt: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Query: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
SLASTLLTSEEA+IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQ SPKPDALHFKWAQFMESERADIIGEPVGVNKRP+EGDALEPSTTESD
Subjt: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
Query: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
D+EPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSV+ FKSGSSSRKKR+S+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLLK
Subjt: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Query: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
LERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRK+ + KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Query: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLL ENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAET ED
Subjt: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Query: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Subjt: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| XP_008460092.1 PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo] | 0.0 | 97.41 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
MSCLLPQFKCHPETFSIQFKTAANNSHHHSF+PTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Subjt: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Query: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
Subjt: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
Query: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
DVEPTS+ELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Subjt: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Query: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRK+ + KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Query: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Subjt: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Query: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| XP_008460093.1 PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis melo] | 0.0 | 94.48 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
MSCLLPQFKCHPETFSIQFKTAANNSHHHSF+PTAYSSYT SPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Subjt: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Query: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
Subjt: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
Query: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
DVEPTS+ELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Subjt: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Query: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRK+ + KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Query: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Subjt: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Query: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| XP_038875580.1 RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida] | 0.0 | 92.6 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTAANNS-HHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVE
MSCLLPQFKCHPETFSIQFKTAAN + HHH+FLPTA SSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRL LPPFDTNTDSVSVERLRSYLGAVE
Subjt: MSCLLPQFKCHPETFSIQFKTAANNS-HHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVE
Query: SSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTES
SSLASTLLTSEEATIAAAAAEAV LAKAAVKVARDAALLANN NSSRAG KS+ SP+PDALHFKWAQFMESERADIIGEPVGVN RP+E DAL+PSTT+S
Subjt: SSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTES
Query: DDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL
DD+EPTSEELELLQDELSESITV+SKRQTERKARRTRAAEKT TSVV KSGSSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTA EELELSEGIQDLL
Subjt: DDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL
Query: KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH
KLERLQEELA+RYGNEPTFAQWAAAAGVNQRTLRK+ + KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH
Subjt: KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH
Query: WWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAE
WWIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAE
Subjt: WWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAE
Query: DMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
DMLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL+S
Subjt: DMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0K917 RNA polymerase sigma factor | 1.3e-297 | 95.17 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
MSCLLPQFKCHPETFSIQFKTAAN SHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTL+VDRLKLPPFDTNTDSVSVERLRSYLGAVES
Subjt: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Query: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
SLASTLLTSEEA+IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQ SPKPDALHFKWAQFMESERADIIGEPVGVNKRP+EGDALEPSTTESD
Subjt: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
Query: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
D+EPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSV+ FKSGSSSRKKR+S+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLLK
Subjt: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Query: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
LERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRK+ + KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Query: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLL ENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAET ED
Subjt: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Query: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Subjt: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A1S3CBA5 RNA polymerase sigma factor | 1.8e-291 | 94.48 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
MSCLLPQFKCHPETFSIQFKTAANNSHHHSF+PTAYSSYT SPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Subjt: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Query: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
Subjt: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
Query: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
DVEPTS+ELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Subjt: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Query: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRK+ + KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Query: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Subjt: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Query: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A1S3CD00 RNA polymerase sigma factor | 1.1e-304 | 97.41 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
MSCLLPQFKCHPETFSIQFKTAANNSHHHSF+PTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Subjt: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Query: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
Subjt: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
Query: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
DVEPTS+ELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Subjt: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Query: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRK+ + KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Query: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Subjt: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Query: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A5A7T955 RNA polymerase sigma factor | 9.1e-288 | 97.63 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Subjt: MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Query: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
Subjt: SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESD
Query: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Subjt: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Query: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRK+ + KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt: LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Query: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Subjt: WIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Query: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMG
MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMG
Subjt: MLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMG
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| A0A6J1DSR7 RNA polymerase sigma factor | 7.3e-269 | 86.88 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFK-------TAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRS
MSCLLPQFKCHPETFSIQFK T AN SHHH+FLPTA SS TKVRDPHSLRTQCILSAASP TSTGTATT NV+RLKLPP D NTDS+S ERLRS
Subjt: MSCLLPQFKCHPETFSIQFK-------TAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRS
Query: YLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALE
YL AVESS ASTLLTSEEATIAAAAAEAVTLAKAAVKVA+DAALL NN NSS+ G KSQ S K DALHFKW QFMESERADIIG PVGVN RP EGDAL+
Subjt: YLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALE
Query: PSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE
T ESD +PT+EELELLQDELS +I V+S+RQTER+A+RTRAAEK TSVV KSGSSSRKKR+S+QEVDYSDPLRYLRATTS SRLLTATEELELSE
Subjt: PSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE
Query: GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRK+ + KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
FSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Subjt: FSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Query: EAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
EAET+ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: EAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| O22056 RNA polymerase sigma factor sigB | 1.6e-175 | 61.28 | Show/hide |
Query: SCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGA----
SCLLPQFKC P++FSI F+T SF ++ + P QC +S SP T + L+V +L+LP FDT++DS+ +R +Y
Subjt: SCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGA----
Query: -----VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALL--ANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGD
+E+ + TLLTS+EA + AAAAEAV LA+AAVKVA+DA L +NN N + T + S KW QF E ERA I+G + V+ I D
Subjt: -----VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALL--ANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGD
Query: ALEPSTTESDDV----EPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTAT
+ S + + + EE+ELL+++ S S+ V+S RQTERKARR + EKT + + K+GSS +KKR QEVD++DPLRYLR TTS+S+LLT
Subjt: ALEPSTTESDDV----EPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTAT
Query: EELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF
EE ELS GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR++ KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF
Subjt: EELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF
Query: DASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKP
DA+KGFKFSTYAHWWIKQAVRK LSDQSR IRLPFHMVEATYRVKEARKQL SE G+HP ++EIAEA GLSMKRL AVL++PK PRSL+QKIG+NQNLKP
Subjt: DASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKP
Query: SEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
SEVI+DPEA T+ED+LIK+FM+QDL+KVLDSL REKQVIRWRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR HLQQYL++
Subjt: SEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| P26683 RNA polymerase sigma factor SigA | 2.6e-69 | 44.88 | Show/hide |
Query: KSG--SSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTL-------RKQNDK-
KSG + SR++ S ++ D +R RLL A EE+EL+ I DLL+LER++E L+E+ +P ++WA A + R+ DK
Subjt: KSG--SSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTL-------RKQNDK-
Query: --SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPD
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ + ++DQSRTIRLP H+ E R+K+ K L E GR P
Subjt: --SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPD
Query: DKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEI
++EIA +++++L + + + P SLE IG ++ + + I + + ET ED + K +++DLEKVLDSL+PRE+ V+R R+G++DGRMKTL+EIG+I
Subjt: DKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEI
Query: MGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
V+RERIRQIE+ A RKL++ R L++Y+
Subjt: MGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| P38023 RNA polymerase sigma factor SigA1 | 7.0e-67 | 40.93 | Show/hide |
Query: SEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPF-------------KSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELS
++ ELL L + T K+KR + +KA T A + T++ P + ++ K ++ +++ D +R RLL A EE+EL+
Subjt: SEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPF-------------KSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELS
Query: EGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVN----QRTL---RKQNDK---SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF
I DLL LER+++EL E+ P+ A+WAAA +R L R+ DK SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+
Subjt: EGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVN----QRTL---RKQNDK---SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF
Query: KFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISD
KFSTYA WWI+QA+ + ++DQSRTIRLP H+ E R+K+ K L E GR P ++EIA +++++L + + + P SLE IG ++ + + I +
Subjt: KFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISD
Query: PEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
+ ET ED + K +++DLE VL +L+PRE+ V+R R+G++DGRMKTL+EIG++ V+RERIRQIE+ A RKL++ R L++Y+
Subjt: PEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| P52322 RNA polymerase sigma factor SigA | 2.4e-59 | 36.93 | Show/hide |
Query: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
D + E++EL +E S+S K R+ RR A +K T D +R RLL A EE+EL+ I DLLK
Subjt: DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Query: LERLQEE----------------------LAERYGNEPTFAQWAAAAGVNQRTL------------------------RKQNDK---SNIRLVISIAKNY
LER++E+ + E+ EP + A G + T R+ +K SN+RLV+SIAK Y
Subjt: LERLQEE----------------------LAERYGNEPTFAQWAAAAGVNQRTL------------------------RKQNDK---SNIRLVISIAKNY
Query: QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRL
G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ + ++DQSRTIRLP H+ E R+K+ K L E R P ++EIA +++++L
Subjt: QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRL
Query: AAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCA
+ + + P SLE IG ++ + + I + + ET ED + K +++DLE VLD+L+PRE+ V+R R+G++DGRMKTL+EIG+I V+RERIRQIE+ A
Subjt: AAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCA
Query: FRKLKNKKRTKHLQQYL
RKL++ R L++Y+
Subjt: FRKLKNKKRTKHLQQYL
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 2.4e-59 | 38.48 | Show/hide |
Query: VKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQW
V+SKRQ ER+A+ RA + + +S KK+ Q D D L+ T +LLTA EE EL IQ LLKLE+++ +L + G EPT +W
Subjt: VKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQW
Query: AAAAGVNQ----------RTLRKQNDKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPF
A A G++ R+ R++ +N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA+WWI+Q++RK + SRTIRLP
Subjt: AAAAGVNQ----------RTLRKQNDKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPF
Query: HMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPR
++ +V EARK + E P +E+A G+S ++L +L + P S++Q I +Q+ E+ D ET + KQ M+ + +L+ L+P+
Subjt: HMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPR
Query: EKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
E+++I+ RFG++ G+ ++L EIGEI G+S+ER+RQ+ES A +LK + L Y
Subjt: EKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT1G08540.1 RNApolymerase sigma subunit 2 | 1.1e-176 | 61.28 | Show/hide |
Query: SCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGA----
SCLLPQFKC P++FSI F+T SF ++ + P QC +S SP T + L+V +L+LP FDT++DS+ +R +Y
Subjt: SCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGA----
Query: -----VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALL--ANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGD
+E+ + TLLTS+EA + AAAAEAV LA+AAVKVA+DA L +NN N + T + S KW QF E ERA I+G + V+ I D
Subjt: -----VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALL--ANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGD
Query: ALEPSTTESDDV----EPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTAT
+ S + + + EE+ELL+++ S S+ V+S RQTERKARR + EKT + + K+GSS +KKR QEVD++DPLRYLR TTS+S+LLT
Subjt: ALEPSTTESDDV----EPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTAT
Query: EELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF
EE ELS GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR++ KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF
Subjt: EELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF
Query: DASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKP
DA+KGFKFSTYAHWWIKQAVRK LSDQSR IRLPFHMVEATYRVKEARKQL SE G+HP ++EIAEA GLSMKRL AVL++PK PRSL+QKIG+NQNLKP
Subjt: DASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKP
Query: SEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
SEVI+DPEA T+ED+LIK+FM+QDL+KVLDSL REKQVIRWRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR HLQQYL++
Subjt: SEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| AT1G64860.1 sigma factor A | 3.0e-33 | 30.33 | Show/hide |
Query: PSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFK-------------SGSSSRKKR------------SSLQEVDYSD
P+ T+ + E ++ +L+ + E+I + K E+ + EK V+S P K SG S+R++R ++ +V
Subjt: PSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFK-------------SGSSSRKKR------------SSLQEVDYSD
Query: PLR-YLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTL----------RKQNDKSNIRLVISIAKNYQGAGMN
+R Y++ S +L+ E + LS+ I+ L+L+ + L +R G EP+ Q A + +++ L R++ SN+RLV+SIA+ Y G
Subjt: PLR-YLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTL----------RKQNDKSNIRLVISIAKNYQGAGMN
Query: LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMT
+ DLVQ G GL+RG EKFD+SKGF+ STY +WWI+Q V + L D SRT+RLP H+ E ++ A K L E G P IAE+ +S K++
Subjt: LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMT
Query: PKAPRSLEQKIGINQNLKPSEV----ISDPEAET-----AEDMLIKQFMKQDLEKVLD-SLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQI
SL++ + N P E I+D E +D+ +K+++ K++ +L REK++IR +G+ D T ++I + +G+SRER+RQ+
Subjt: PKAPRSLEQKIGINQNLKPSEV----ISDPEAET-----AEDMLIKQFMKQDLEKVLD-SLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQI
Query: ESCAFRKLKNKKRTKHLQQYLM
A KLK+ R + ++ ++
Subjt: ESCAFRKLKNKKRTKHLQQYLM
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| AT2G36990.1 RNApolymerase sigma-subunit F | 1.7e-60 | 38.48 | Show/hide |
Query: VKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQW
V+SKRQ ER+A+ RA + + +S KK+ Q D D L+ T +LLTA EE EL IQ LLKLE+++ +L + G EPT +W
Subjt: VKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQW
Query: AAAAGVNQ----------RTLRKQNDKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPF
A A G++ R+ R++ +N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA+WWI+Q++RK + SRTIRLP
Subjt: AAAAGVNQ----------RTLRKQNDKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPF
Query: HMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPR
++ +V EARK + E P +E+A G+S ++L +L + P S++Q I +Q+ E+ D ET + KQ M+ + +L+ L+P+
Subjt: HMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPR
Query: EKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
E+++I+ RFG++ G+ ++L EIGEI G+S+ER+RQ+ES A +LK + L Y
Subjt: EKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
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| AT3G53920.1 RNApolymerase sigma-subunit C | 4.8e-47 | 32.27 | Show/hide |
Query: SEELELLQDELSESITVKSKRQTERKARRTR-AAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERL
S+ EL+ ++ + V S+R+ ++KARR+ AE S +P R +++ P +Y + SR E E+S G++ + +ER+
Subjt: SEELELLQDELSESITVKSKRQTERKARRTR-AAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERL
Query: QEELAERYGNEPTFAQWAAAAGVNQRTL----------RKQNDKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ
+ +L E G + + WAAAAG+N++ L R + KS LV+ +A+NY+G G+ +DL+Q G G+++GAE+FD ++G+KFSTY +WI++
Subjt: QEELAERYGNEPTFAQWAAAAGVNQRTL----------RKQNDKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ
Query: AVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENG-RHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLI
++ +S +R + +P ++ +++ARK L + +G ++ D+EIA+ G S+K++ A K S+++K+G K E D E+ E+ ++
Subjt: AVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENG-RHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLI
Query: KQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
+Q ++D+ +L+ L PREKQV+ R+G++D R K+L+EIG+++ VS+E IR+IE A KL+++ + L+ YL
Subjt: KQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| AT5G13730.1 sigma factor 4 | 3.8e-44 | 35.97 | Show/hide |
Query: STSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRT-----LRKQNDKSNI-----RLVISIAKNYQGAGMNLQDLVQEGCR
S S L+ EE++L +++ KLE L + E NE A+ G +R+ R++ + I RLV+SIA YQG G+NLQDL+QEG
Subjt: STSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRT-----LRKQNDKSNI-----RLVISIAKNYQGAGMNLQDLVQEGCR
Query: GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQK
GL+RGAE+FD +G+K STY +WWIKQA+ + ++ +SR ++LP M E T +V EA L + R P +EIAE L++ + + ++P SL++
Subjt: GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQK
Query: IGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
N + E++ P+ E+M+ ++ MK ++E++L SL RE +V+ FG+ + +EIG+ + +SRER+RQI A +KL+N L+ Y
Subjt: IGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
Query: LMS
S
Subjt: LMS
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