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IVF0013899 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013899
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionMeiotic recombination protein SPO11-1 isoform X4
Genome locationchr01:9650834..9651074
RNA-Seq ExpressionIVF0013899
SyntenyIVF0013899
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0030488 - tRNA methylation (biological process)
GO:0042138 - meiotic DNA double-strand break formation (biological process)
GO:0051026 - chiasma assembly (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005694 - chromosome (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity (molecular function)
GO:0004809 - tRNA (guanine-N2-)-methyltransferase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK07936.1 meiotic recombination protein SPO11-1 isoform X4 [Cucumis melo var. makuwa]1.36e-30100Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQEKN
        MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQEKN
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQEKN

XP_031744434.1 meiotic recombination protein SPO11-1-like isoform X4 [Cucumis sativus]4.03e-1875.47Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQ
        MAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KGAGS +   RAHT+
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQ

XP_031744444.1 meiotic recombination protein SPO11-1-like isoform X4 [Cucumis sativus]3.70e-1875.47Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQ
        MAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KGAGS +   RAHT+
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQ

XP_031744448.1 meiotic recombination protein SPO11-1-like isoform X8 [Cucumis sativus]1.20e-1875.47Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQ
        MAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KGAGS +   RAHT+
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQ

XP_031745987.1 meiotic recombination protein SPO11-1-like isoform X5 [Cucumis sativus]4.83e-1875.47Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQ
        MAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KGAGS +   RAHT+
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQ

TrEMBL top hitse value%identityAlignment
A0A1S3CI64 meiotic recombination protein SPO11-1 isoform X27.7e-14100Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
        MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK

A0A1S3CJR6 meiotic recombination protein SPO11-1 isoform X17.7e-14100Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
        MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK

A0A1S4E3Z9 meiotic recombination protein SPO11-1 isoform X37.7e-14100Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
        MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK

A0A1S4E415 meiotic recombination protein SPO11-1 isoform X47.7e-14100Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
        MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK

A0A5D3CC45 Meiotic recombination protein SPO11-1 isoform X42.2e-24100Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQEKN
        MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQEKN
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQEKN

SwissProt top hitse value%identityAlignment
A2XFC1 DNA topoisomerase 6 subunit A39.7e-0648.65Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLT
        M+YD+ NL  P ++W+G   SD +KY +PEQC +P+T
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLT

Q5ZPV8 Meiotic recombination protein SPO11-14.4e-0651.28Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
        +AYDA  LR+P ++W+G F SD E Y LP+ CL+ L+S+
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK

Q7Y021 Meiotic recombination protein SPO11-14.4e-0651.28Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
        +AYDA  LR+P ++W+G F SD E Y LP+ CL+ L+S+
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK

Q9LZ03 DNA topoisomerase 6 subunit A7.4e-0646.15Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
        M+YD+ NL  P ++W+G   SD +KY +PEQC +P+T +
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK

Q9M4A2 Meiotic recombination protein SPO11-11.2e-0858.97Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
        MAYD ++LR P ++W+GAF SDSE Y +P+QCL+PLT +
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK

Arabidopsis top hitse value%identityAlignment
AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein8.7e-1058.97Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
        MAYD ++LR P ++W+GAF SDSE Y +P+QCL+PLT +
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK

AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein5.3e-0746.15Show/hide
Query:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
        M+YD+ NL  P ++W+G   SD +KY +PEQC +P+T +
Subjt:  MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTACGATGCAAAGAATCTCAGAATCCCACAACTACAATGGATTGGAGCTTTTGCTTCAGATTCTGAGAAATACGATCTACCAGAACAATGTCTCATCCCATTGAC
ATCCAAGGGTGCGGGATCTCACTTGGCACCCACACGTGCACACACACAAGAGAAGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTACGATGCAAAGAATCTCAGAATCCCACAACTACAATGGATTGGAGCTTTTGCTTCAGATTCTGAGAAATACGATCTACCAGAACAATGTCTCATCCCATTGAC
ATCCAAGGGTGCGGGATCTCACTTGGCACCCACACGTGCACACACACAAGAGAAGAACTGA
Protein sequenceShow/hide protein sequence
MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQEKN