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IVF0013933 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013933
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSplicing factor subunit
Genome locationchr08:1338304..1340283
RNA-Seq ExpressionIVF0013933
SyntenyIVF0013933
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
InterPro domainsIPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10
IPR017089 - Splicing factor 3B, subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134645.1 uncharacterized protein At4g14342 [Cucumis sativus]2.89e-58100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_015887858.1 uncharacterized protein At4g14342 [Ziziphus jujuba]4.11e-5898.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_021593515.1 uncharacterized protein At4g14342 [Manihot esculenta]5.84e-5897.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYPILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_021731175.1 uncharacterized protein At4g14342-like [Chenopodium quinoa]8.30e-5898.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

XP_038719409.1 uncharacterized protein At4g14342 [Tripterygium wilfordii]5.84e-5897.7Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

TrEMBL top hitse value%identityAlignment
A0A0A0KKG4 Splicing factor subunit3.8e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

A0A1S3AZE4 Splicing factor subunit3.8e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

A0A5A7UDP6 Splicing factor subunit3.8e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

A0A6J1IBJ4 Splicing factor subunit5.0e-4498.85Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

E5GC24 Splicing factor subunit3.8e-44100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143422.8e-4491.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERE++
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

Q56K13 Splicing factor 3B subunit 51.2e-2659.52Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFA+AENES  R R+N M+KML PCG P ++ ++
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

Q9BWJ5 Splicing factor 3B subunit 51.2e-2659.52Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFA+AENES  R R+N M+KML PCG P ++ ++
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

Q9LW64 Uncharacterized protein At3g233252.8e-4491.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

Q9VHI4 Splicing factor 3B subunit 52.8e-2865.06Show/hide
Query:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFA+AENES  R R+N M++ML PCG PPE+ +D
Subjt:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

Arabidopsis top hitse value%identityAlignment
AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 102.0e-4591.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERED+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD

AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 102.0e-4591.95Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFA+AENESIGRERYNFMQKMLLPCGLPPERE++
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACCGGGCATGCCGACTTAAACAGATTTGAGTGGGCAGTGAACAT
TCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCGTACTTTGCTGTAGCAGAAAATGAATCTATTGGGAGGGAACGCTATAACTTTATGCAGAAAA
TGTTACTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA
mRNA sequenceShow/hide mRNA sequence
CAAAGTTTTGTTCATCATTTATGCTTTTGGGGTTTGACTAAAAGAAATTGTTAGGGGGTGGGGTTCTTCTTGAAACCCTAGGGAGTGAACTGTGCTGGACCTTTCGCTCG
CCTGCCTTCTCTGCTTCGTCGCGCCTATTGCAATTTGCGAGCGAACATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGG
GAACCGGGCATGCCGACTTAAACAGATTTGAGTGGGCAGTGAACATTCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCGTACTTTGCTGTAGCA
GAAAATGAATCTATTGGGAGGGAACGCTATAACTTTATGCAGAAAATGTTACTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAGATTGTTATCATTAAGTAAT
TTAAGTTGTAGTTAAGATTGCGAATGATTAGACATTATAGGGTTAATGAATTTCTTCTTTATGAACCAACGATGTGTTTGTATGGTAGGAAGTGTACGATTCATTTTTCC
ATGTTCCGGTTATGTAAGGTTTACGCATTCCCAGGTACTATTTCCTCGACCTCGTCCTTTTTGTTATAAGAACAAGGTCCATCTCATTCATAGTTTATAAAATTGTTTGT
AAACTATAATTACATATAATAGCTGTTGGCCCCTTATTTGCATGGACTGAAATAATTAAGAAATGGAAGTTTCCATTA
Protein sequenceShow/hide protein sequence
MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD