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IVF0013936 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0013936
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr11:20337963..20338238
RNA-Seq ExpressionIVF0013936
SyntenyIVF0013936
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040817.1 hypothetical protein E6C27_scaffold333G00350 [Cucumis melo var. makuwa]2.37e-1952.87Show/hide
Query:  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKM-SGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPP
        M EAL  WM+H K V PFP T+EKLCLKY+P+L + PQ  M  GR +LAGL+R+ + +QNKEEERC KT  +++ E +S+     PP
Subjt:  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKM-SGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPP

KAA0054399.1 hypothetical protein E6C27_scaffold24G001450 [Cucumis melo var. makuwa]4.49e-5096.63Show/hide
Query:  MNE--ALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPPH
        +NE  ALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPPH
Subjt:  MNE--ALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPPH

KAA0060350.1 hypothetical protein E6C27_scaffold22G001410 [Cucumis melo var. makuwa]1.25e-2466.18Show/hide
Query:  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKT
        MN AL GWM H++   PFP+T+EKLC KYLPTLA+YP+I+M GRVNLAGL+R+ +LH NKEEE  Q T
Subjt:  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKT

KAA0065577.1 hypothetical protein E6C27_scaffold90G00150 [Cucumis melo var. makuwa]1.61e-1280.43Show/hide
Query:  MSGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPP
        M GRVNLAGLS I +LH+NKEEER QKTQKQRRPESE++KVEKS P
Subjt:  MSGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPP

KGN57724.1 hypothetical protein Csa_010778 [Cucumis sativus]4.50e-2762.07Show/hide
Query:  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPPH
        +N AL GWMKH KD  PFP+ VEKLC KYLPT  +YPQI+M GRVNLAGL+R+ S+H NKE    QKTQKQ   E E   V +SP H
Subjt:  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPPH

TrEMBL top hitse value%identityAlignment
A0A0A0L9R5 Uncharacterized protein3.4e-1962.07Show/hide
Query:  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPPH
        +N AL GWMKH KD  PFP+ VEKLC KYLPT  +YPQI+M GRVNLAGL+R+ S+H NKE    QKTQKQ   E E   V +SP H
Subjt:  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPPH

A0A5A7TGV6 Uncharacterized protein4.3e-1452.87Show/hide
Query:  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKM-SGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPP
        M EAL  WM+H K V PFP T+EKLCLKY+P+L + PQ  M  GR +LAGL+R+ + +QNKEEERC KT  +++ E +S+     PP
Subjt:  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKM-SGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPP

A0A5A7ULS0 Uncharacterized protein6.6e-3998.82Show/hide
Query:  ALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPPHR
        ALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPPH+
Subjt:  ALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPPHR

A0A5A7V6C0 Uncharacterized protein2.1e-0843.68Show/hide
Query:  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKM-SGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPP
        MN+A  GWM++ K    FP+  +K C KYL TLA+YPQ  M  G+ N+A L+RI +L+QNKEEE CQ   + ++   ++  V+   P
Subjt:  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKM-SGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPP

A0A5D3DFD3 Uncharacterized protein1.4e-1766.18Show/hide
Query:  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKT
        MN AL GWM H++   PFP+T+EKLC KYLPTLA+YP+I+M GRVNLAGL+R+ +LH NKEEE  Q T
Subjt:  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAAGCTCTTCGTGGATGGATGAAGCACTATAAAGACGTCCTACCCTTCCCATCTACAGTTGAGAAGTTGTGTCTCAAATATCTCCCCACCCTCGCGAAATACCC
ACAGATAAAAATGAGTGGGAGAGTCAACTTGGCGGGACTCAGTCGAATAAGCAGCCTCCACCAAAATAAAGAGGAAGAAAGATGCCAAAAGACACAGAAACAAAGGAGAC
CAGAGTCTGAGAGTGACAAAGTTGAGAAGTCTCCACCCCACCGTGTTGGAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAAGCTCTTCGTGGATGGATGAAGCACTATAAAGACGTCCTACCCTTCCCATCTACAGTTGAGAAGTTGTGTCTCAAATATCTCCCCACCCTCGCGAAATACCC
ACAGATAAAAATGAGTGGGAGAGTCAACTTGGCGGGACTCAGTCGAATAAGCAGCCTCCACCAAAATAAAGAGGAAGAAAGATGCCAAAAGACACAGAAACAAAGGAGAC
CAGAGTCTGAGAGTGACAAAGTTGAGAAGTCTCCACCCCACCGTGTTGGAATTTAA
Protein sequenceShow/hide protein sequence
MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPPHRVGI