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IVF0014037 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014037
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:21759412..21759867
RNA-Seq ExpressionIVF0014037
SyntenyIVF0014037
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054564.1 uncharacterized protein E6C27_scaffold24G003560 [Cucumis melo var. makuwa]6.30e-77100Show/hide
Query:  MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA
        MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA
Subjt:  MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA

Query:  KITTIWQELVEYRPMN
        KITTIWQELVEYRPMN
Subjt:  KITTIWQELVEYRPMN

KAA0065480.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]7.04e-5959.6Show/hide
Query:  MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA
        M + +SG+NK GFIT  I+KPS+G LL AW CN+D++ASWI+NS+SKEIAAS++Y GS+KE+WDEL++ ++QSNGP IYQLR++ VT  QG+L+IE YY 
Subjt:  MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA

Query:  KITTIWQELVEYRPMNVCTCEGSKKMIDFFNATFVMTFLMGLNESYSQIRA
        K+ TIWQ L EYR  N CTC G K  ID   + ++M FLMGLN+SY+ +RA
Subjt:  KITTIWQELVEYRPMNVCTCEGSKKMIDFFNATFVMTFLMGLNESYSQIRA

XP_022145891.1 uncharacterized protein LOC111015239 [Momordica charantia]9.81e-6664.9Show/hide
Query:  MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA
        M + LSGKNKVGFI  +IKKP+ GNLL+AWKCN+D+I SWIINS+SKEIAAS++Y GS K++WDELKE ++QS+ P I+QLR++LVT  QG+LSIE YY 
Subjt:  MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA

Query:  KITTIWQELVEYRPMNVCTCEGSKKMIDFFNATFVMTFLMGLNESYSQIRA
        K+ T+WQEL +YRP   CTC G K + +FF + +VMTFLMGLNESY++IRA
Subjt:  KITTIWQELVEYRPMNVCTCEGSKKMIDFFNATFVMTFLMGLNESYSQIRA

XP_038888312.1 uncharacterized protein LOC120078158 [Benincasa hispida]7.30e-6577.5Show/hide
Query:  MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA
        M L LSGKNK+GFIT +I+KP EG+L SAW+CN+DVI SWIINS+SKEIA SLVY GSVKE+WDELKE Y QSNGPHIYQLR+DL T TQG+LS+E+YYA
Subjt:  MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA

Query:  KITTIWQELVEYRPMNVCTC
        KITTIWQELVEYRP + CTC
Subjt:  KITTIWQELVEYRPMNVCTC

XP_038894602.1 uncharacterized protein LOC120083117 [Benincasa hispida]5.18e-6767.83Show/hide
Query:  KNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQ
        + +  F+  +IKKP EGNLL AW+CN+DVI SWIINSISKEIA SLVY G+VK++WDELKE YRQSNGPH+YQLR+DLVT  Q +LSIE YYAK TTIW+
Subjt:  KNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQ

Query:  ELVEYRPMNVCTCEGSKKMIDFFNATFVMTFLMGLNESYSQIR
         LVEY P++ CTC G KKM++F    FVM FLMGLN+S++QIR
Subjt:  ELVEYRPMNVCTCEGSKKMIDFFNATFVMTFLMGLNESYSQIR

TrEMBL top hitse value%identityAlignment
A0A5A7T2X0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-3776.19Show/hide
Query:  TNSIKKP---SEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVE
        TN +  P   S+G+LLSAW+CN+DVIASWIINSISKEIAASLVY G VKE+WD+LKE YRQSNGPHIY+LR+DLVT TQG+L +E+YYAKITTIWQELVE
Subjt:  TNSIKKP---SEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVE

Query:  YRPMN
        Y+ MN
Subjt:  YRPMN

A0A5A7VE66 Cysteine-rich RLK (Receptor-like protein kinase) 86.8e-4959.6Show/hide
Query:  MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA
        M + +SG+NK GFIT  I+KPS+G LL AW CN+D++ASWI+NS+SKEIAAS++Y GS+KE+WDEL++ ++QSNGP IYQLR++ VT  QG+L+IE YY 
Subjt:  MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA

Query:  KITTIWQELVEYRPMNVCTCEGSKKMIDFFNATFVMTFLMGLNESYSQIRA
        K+ TIWQ L EYR  N CTC G K  ID   + ++M FLMGLN+SY+ +RA
Subjt:  KITTIWQELVEYRPMNVCTCEGSKKMIDFFNATFVMTFLMGLNESYSQIRA

A0A5D3D9Z1 Retrotrans_gag domain-containing protein9.5e-59100Show/hide
Query:  MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA
        MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA
Subjt:  MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA

Query:  KITTIWQELVEYRPMN
        KITTIWQELVEYRPMN
Subjt:  KITTIWQELVEYRPMN

A0A6J1CXR2 uncharacterized protein LOC1110152393.9e-5264.9Show/hide
Query:  MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA
        M + LSGKNKVGFI  +IKKP+ GNLL+AWKCN+D+I SWIINS+SKEIAAS++Y GS K++WDELKE ++QS+ P I+QLR++LVT  QG+LSIE YY 
Subjt:  MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYA

Query:  KITTIWQELVEYRPMNVCTCEGSKKMIDFFNATFVMTFLMGLNESYSQIRA
        K+ T+WQEL +YRP   CTC G K + +FF + +VMTFLMGLNESY++IRA
Subjt:  KITTIWQELVEYRPMNVCTCEGSKKMIDFFNATFVMTFLMGLNESYSQIRA

A0A6J1DPT8 uncharacterized protein LOC1110224203.0e-3655.56Show/hide
Query:  SIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMN
        +I KP + N+LSAWKCN+DVI  WI+NS+S++IAASLVY  S  ++W+EL++ ++QSNGP IYQLR++ VT       IE YY K+ T+WQEL EY   N
Subjt:  SIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMN

Query:  VCTCEGSKKMIDFFNATFVMTFLMGLNESYSQIRA
         CTC G K++++ FN+ +VM FLMGLNESY+ +RA
Subjt:  VCTCEGSKKMIDFFNATFVMTFLMGLNESYSQIRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2.0e-1633.33Show/hide
Query:  KVGFITNSIKKPSE-GNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQE
        K GFI  ++ KP     L   W+  + ++  W++NS++ ++  S++Y  +  ++W++L+ ++       IYQLRR L T  QG  S+E Y+ K++ +W E
Subjt:  KVGFITNSIKKPSE-GNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQE

Query:  LVEYRPMNVCTCEG
        L EY P+  C C G
Subjt:  LVEYRPMNVCTCEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCTTGTGTTATCTGGAAAGAACAAAGTTGGCTTTATCACCAACTCAATCAAGAAACCTTCAGAAGGTAATCTCCTCTCAGCTTGGAAATGCAACAGTGATGTGAT
AGCCTCTTGGATTATCAACTCCATTTCGAAAGAAATAGCGGCAAGCCTTGTTTACCATGGAAGCGTAAAGGAAGTATGGGATGAATTGAAAGAAATATATAGGCAGTCCA
ATGGACCTCACATATACCAGTTGCGAAGGGACTTGGTAACCGCTACACAAGGAAGCCTCTCGATTGAAATGTACTATGCAAAAATTACCACTATATGGCAAGAACTTGTT
GAATATCGTCCTATGAATGTGTGCACTTGTGAAGGGTCAAAGAAAATGATTGATTTTTTTAATGCAACGTTTGTAATGACCTTTCTTATGGGATTAAATGAATCTTATTC
TCAAATTAGAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGCTTGTGTTATCTGGAAAGAACAAAGTTGGCTTTATCACCAACTCAATCAAGAAACCTTCAGAAGGTAATCTCCTCTCAGCTTGGAAATGCAACAGTGATGTGAT
AGCCTCTTGGATTATCAACTCCATTTCGAAAGAAATAGCGGCAAGCCTTGTTTACCATGGAAGCGTAAAGGAAGTATGGGATGAATTGAAAGAAATATATAGGCAGTCCA
ATGGACCTCACATATACCAGTTGCGAAGGGACTTGGTAACCGCTACACAAGGAAGCCTCTCGATTGAAATGTACTATGCAAAAATTACCACTATATGGCAAGAACTTGTT
GAATATCGTCCTATGAATGTGTGCACTTGTGAAGGGTCAAAGAAAATGATTGATTTTTTTAATGCAACGTTTGTAATGACCTTTCTTATGGGATTAAATGAATCTTATTC
TCAAATTAGAGCTTAA
Protein sequenceShow/hide protein sequence
MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELV
EYRPMNVCTCEGSKKMIDFFNATFVMTFLMGLNESYSQIRA