CuGenDBv2

Gene ID	IVF0014041
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Genome location	chr05:2496349..2496693
RNA-Seq Expression	IVF0014041
Synteny	IVF0014041
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0041960.1 reverse transcriptase [Cucumis melo var. makuwa]

5.11e-56

89.42

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG
        MAIPL SSENSGETVPKEIMRVLEKY DVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNA FIRPAKAPYGA    + 
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG

Query:  RKMG
        +K G
Subjt:  RKMG

KAA0046199.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]

2.57e-55

90.2

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG
        MAIPLKSSENSG+TVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVP AKP AKNAYRMAPPELAELRKQLDELLNAGFIRPAKA YGA    K 
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG

Query:  RK
        +K
Subjt:  RK

KAA0050675.1 uncharacterized protein E6C27_scaffold673G001580 [Cucumis melo var. makuwa]

1.96e-57

90.38

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG
        MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPP KNAYRMAPPELAELRKQLDELLNAGFI+PAKAPYGA    + 
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG

Query:  RKMG
        +K G
Subjt:  RKMG

KAA0053390.1 polyprotein [Cucumis melo var. makuwa]

4.73e-57

92.52

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG
        MAIPLKSSENSGETVP+EIMRVLEKY DVM DS PKSLPP+RMIDHEIELVPGAKPPAKNAYRMAPPELAELRK+LDEL+NAGFIRPAKAPYGAQFFSKG
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG

Query:  RKMGVCD
        RKMGV D
Subjt:  RKMGVCD

TYK25834.1 uncharacterized protein E5676_scaffold436G00420 [Cucumis melo var. makuwa]

1.00e-59

93.46

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG
        MAIPL SSENSGETVPKEIMRVLEKYRDVM DSLPKSLPPRRMIDHEIELVPGAK PAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYG QFFS+ 
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG

Query:  RKMGVCD
        RKMGV D
Subjt:  RKMGVCD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UDW8 Polyprotein

3.3e-48

92.52

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG
        MAIPLKSSENSGETVP+EIMRVLEKY DVM DS PKSLPP+RMIDHEIELVPGAKPPAKNAYRMAPPELAELRK+LDEL+NAGFIRPAKAPYGAQFFSKG
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG

Query:  RKMGVCD
        RKMGV D
Subjt:  RKMGVCD

A0A5A7UQ20 Uncharacterized protein

7.0e-46

90.65

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG
        MAIPL S ENSGETVPKEI+RVLEKYRDVMPDSLPKSLPPRRMIDHEIELVP AKPPAKNAYRMAPPELAEL KQLDELLNAGFIRPAKAPYGA  FS+ 
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG

Query:  RKMGVCD
        RKMGV D
Subjt:  RKMGVCD

A0A5D3BRZ6 Reverse transcriptase

9.1e-46

92.31

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG
        MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGA    + 
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG

Query:  RKMG
        +K G
Subjt:  RKMG

A0A5D3C4R1 Reverse transcriptase

9.1e-46

92.31

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG
        MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGA    + 
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG

Query:  RKMG
        +K G
Subjt:  RKMG

A0A5D3DQI8 Uncharacterized protein

1.7e-47

93.46

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Query:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG
        MAIPL SSENSGETVPKEIMRVLEKYRDVM DSLPKSLPPRRMIDHEIELVPGAK PAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYG QFFS+ 
Subjt:  MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKG

Query:  RKMGVCD
        RKMGV D
Subjt:  RKMGVCD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCCATCCCACTCAAATCATCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATCATGCGCGTGCTAGAGAAATACCGTGATGTGATGCCCGATAGTTTGCCCAAGTC
TTTGCCACCTCGGAGAATGATTGATCATGAGATCGAGTTAGTGCCTGGAGCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCGCCTCCGGAGTTAGCTGAACTTCGGA
AACAGTTAGATGAACTACTGAATGCAGGGTTTATCAGGCCTGCAAAAGCTCCGTATGGGGCCCAGTTCTTTTCCAAAGGAAGAAAGATGGGAGTTTGCGACTGTGCATTG
ATTATCGCGCCCTAA

mRNA sequence

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Protein sequence

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MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAQFFSKGRKMGVCDCAL
IIAP

IVF0014041 (gene) of Melon (IVF77) v1 genome