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IVF0014055 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014055
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr12:8760140..8760568
RNA-Seq ExpressionIVF0014055
SyntenyIVF0014055
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035974.1 hypothetical protein E6C27_scaffold56G001830 [Cucumis melo var. makuwa]7.34e-3554.55Show/hide
Query:  MAPIDSETERCRRFMNGLRGEIKTSV-----------LVDVALRVEKSLGVKRPGCELSKEEEKESIENLKNPRPV-KDRVGIARKKPRCNECGKRHSGT
        MA IDSET+RCRRF++GLRG+I+T V           LVD  LRVEKS+GVK     +S EEEK SIEN K    V ++    + KK RC+ECGKRHSGT
Subjt:  MAPIDSETERCRRFMNGLRGEIKTSV-----------LVDVALRVEKSLGVKRPGCELSKEEEKESIENLKNPRPV-KDRVGIARKKPRCNECGKRHSGT

Query:  CKKKSITCFQCGEKGYYK----------KERSIQIGVAFHSVQ
        C+++SITCFQC +K +YK          +ERS QIGVA HSVQ
Subjt:  CKKKSITCFQCGEKGYYK----------KERSIQIGVAFHSVQ

KAA0056429.1 hypothetical protein E6C27_scaffold186G001860 [Cucumis melo var. makuwa]1.34e-1642.11Show/hide
Query:  ERCRRFMNG-LRGEIKTSVLVDVALRVEKSLGVKRPGCELSKEEEKESIENLKNPRPVKDRVGIAR-------KKPRCNECGKRHSGTCKKKSITCFQCG
        E+C R M G +       +  + AL+VEKSL +KRP  ELS+EEE+E+I N     P K +  I++       +K +CN+ G+RH+  C++KSITC Q G
Subjt:  ERCRRFMNG-LRGEIKTSVLVDVALRVEKSLGVKRPGCELSKEEEKESIENLKNPRPVKDRVGIAR-------KKPRCNECGKRHSGTCKKKSITCFQCG

Query:  EKGYYKKERSIQIG
        EKG+YK E   + G
Subjt:  EKGYYKKERSIQIG

KAA0060066.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.81e-0933.09Show/hide
Query:  IDSETERCRRFMNGLRGEIKTSV-----------LVDVALRVEKSLGVKRPGCELSK-----------EEEKESIE-NLKNPRPVKDRVG----------
        + SE++RCRRF  GLR EI+T V           LV+ ALRVE+S+  ++   ELS+           E+ + + E N+ + +  K+R G          
Subjt:  IDSETERCRRFMNGLRGEIKTSV-----------LVDVALRVEKSLGVKRPGCELSK-----------EEEKESIE-NLKNPRPVKDRVG----------

Query:  -IARKKPRCNECGKRHSGTCKKKSITCFQCGEKGYYKKE
           R+ P C  CG+ H G C   +  C+QCG+ G++KK+
Subjt:  -IARKKPRCNECGKRHSGTCKKKSITCFQCGEKGYYKKE

KAA0062421.1 hypothetical protein E6C27_scaffold154G002300 [Cucumis melo var. makuwa]8.00e-1948.62Show/hide
Query:  MAPIDSETERCRRFMNGLRGEIKTSV-----------LVDVALRVEKSLGVKRPGCELSKEEEKESIENLKNPRPVKDRVG-IARKKPRCNECGKRHSGT
        M  ID E ERCR+F+ GLRG+I+TSV           LVDVAL VEKSLG+KRP  ELS EEE  S+E  K    V       + +KP+C +CG+ H G 
Subjt:  MAPIDSETERCRRFMNGLRGEIKTSV-----------LVDVALRVEKSLGVKRPGCELSKEEEKESIENLKNPRPVKDRVG-IARKKPRCNECGKRHSGT

Query:  CKKKSITCF
        C+++SI C+
Subjt:  CKKKSITCF

KAA0068140.1 gag protease polyprotein [Cucumis melo var. makuwa]1.84e-0939.36Show/hide
Query:  SVLVDVALRV-------EKSLGVKRPGCELSKEEEKESIENLKNPRPVKDRVG---IARKKPRCNECGKRHSGTCKKKSITCFQCGEKGYYKKE
        S +++ A+RV       EKS   K+     S EEE++S+E          R G      +KPR  ECGKRHSG C++ SI CF+CG+ G+++KE
Subjt:  SVLVDVALRV-------EKSLGVKRPGCELSKEEEKESIENLKNPRPVKDRVG---IARKKPRCNECGKRHSGTCKKKSITCFQCGEKGYYKKE

TrEMBL top hitse value%identityAlignment
A0A5A7V0R0 Reverse transcriptase1.4e-0733.09Show/hide
Query:  IDSETERCRRFMNGLRGEIKTSV-----------LVDVALRVEKSLGVKRPGCELS-----------KEEEKESIE-NLKNPRPVKDRVG----------
        + SE++RCRRF  GLR EI+T V           LV+ ALRVE+S+  ++   ELS           +E+ + + E N+ + +  K+R G          
Subjt:  IDSETERCRRFMNGLRGEIKTSV-----------LVDVALRVEKSLGVKRPGCELS-----------KEEEKESIE-NLKNPRPVKDRVG----------

Query:  -IARKKPRCNECGKRHSGTCKKKSITCFQCGEKGYYKKE
           R+ P C  CG+ H G C   +  C+QCG+ G++KK+
Subjt:  -IARKKPRCNECGKRHSGTCKKKSITCFQCGEKGYYKKE

A0A5D3DC62 Gag protease polyprotein2.3e-0739.36Show/hide
Query:  SVLVDVALRV-------EKSLGVKRPGCELSKEEEKESIENLKNPRPVKDRVG---IARKKPRCNECGKRHSGTCKKKSITCFQCGEKGYYKKE
        S +++ A+RV       EKS   K+     S EEE++S+E          R G      +KPR  ECGKRHSG C++ SI CF+CG+ G+++KE
Subjt:  SVLVDVALRV-------EKSLGVKRPGCELSKEEEKESIENLKNPRPVKDRVG---IARKKPRCNECGKRHSGTCKKKSITCFQCGEKGYYKKE

A0A5D3DS44 Uncharacterized protein1.2e-1448.62Show/hide
Query:  MAPIDSETERCRRFMNGLRGEIKTSV-----------LVDVALRVEKSLGVKRPGCELSKEEEKESIENLKNPRPV-KDRVGIARKKPRCNECGKRHSGT
        M  ID E ERCR+F+ GLRG+I+TSV           LVDVAL VEKSLG+KRP  ELS EEE  S+E  K    V +     + +KP+C +CG+ H G 
Subjt:  MAPIDSETERCRRFMNGLRGEIKTSV-----------LVDVALRVEKSLGVKRPGCELSKEEEKESIENLKNPRPV-KDRVGIARKKPRCNECGKRHSGT

Query:  CKKKSITCF
        C+++SI C+
Subjt:  CKKKSITCF

A0A5D3DZA3 Uncharacterized protein6.3e-1342.11Show/hide
Query:  ERCRRFMNG-LRGEIKTSVLVDVALRVEKSLGVKRPGCELSKEEEKESIENLKNPRPVKDRVGIAR-------KKPRCNECGKRHSGTCKKKSITCFQCG
        E+C R M G +       +  + AL+VEKSL +KRP  ELS+EEE+E+I N     P K +  I++       +K +CN+ G+RH+  C++KSITC Q G
Subjt:  ERCRRFMNG-LRGEIKTSVLVDVALRVEKSLGVKRPGCELSKEEEKESIENLKNPRPVKDRVGIAR-------KKPRCNECGKRHSGTCKKKSITCFQCG

Query:  EKGYYKKERSIQIG
        EKG+YK E   + G
Subjt:  EKGYYKKERSIQIG

A0A5D3E3Q3 Retrotrans_gag domain-containing protein1.6e-2754.55Show/hide
Query:  MAPIDSETERCRRFMNGLRGEIKTSV-----------LVDVALRVEKSLGVKRPGCELSKEEEKESIENLKNPRPV-KDRVGIARKKPRCNECGKRHSGT
        MA IDSET+RCRRF++GLRG+I+T V           LVD  LRVEKS+GVK     +S EEEK SIEN K    V ++    + KK RC+ECGKRHSGT
Subjt:  MAPIDSETERCRRFMNGLRGEIKTSV-----------LVDVALRVEKSLGVKRPGCELSKEEEKESIENLKNPRPV-KDRVGIARKKPRCNECGKRHSGT

Query:  CKKKSITCFQCGEKGYYK----------KERSIQIGVAFHSVQ
        C+++SITCFQC +K +YK          +ERS QIGVA HSVQ
Subjt:  CKKKSITCFQCGEKGYYK----------KERSIQIGVAFHSVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACCAATCGACTCAGAGACTGAACGATGTAGGCGATTTATGAATGGACTAAGAGGAGAAATCAAAACTTCTGTTTTAGTAGATGTAGCTCTGCGAGTAGAGAAGAG
TTTGGGTGTAAAAAGACCAGGTTGTGAGTTAAGTAAAGAAGAAGAAAAAGAAAGTATAGAGAATCTTAAAAATCCAAGACCTGTCAAGGATCGCGTTGGAATAGCAAGAA
AAAAACCAAGGTGTAATGAGTGTGGCAAGAGGCATTCGGGAACTTGTAAGAAAAAAAGCATAACATGTTTTCAATGTGGCGAAAAAGGGTATTACAAGAAAGAAAGATCA
ATTCAAATAGGAGTGGCCTTCCACTCAGTTCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACCAATCGACTCAGAGACTGAACGATGTAGGCGATTTATGAATGGACTAAGAGGAGAAATCAAAACTTCTGTTTTAGTAGATGTAGCTCTGCGAGTAGAGAAGAG
TTTGGGTGTAAAAAGACCAGGTTGTGAGTTAAGTAAAGAAGAAGAAAAAGAAAGTATAGAGAATCTTAAAAATCCAAGACCTGTCAAGGATCGCGTTGGAATAGCAAGAA
AAAAACCAAGGTGTAATGAGTGTGGCAAGAGGCATTCGGGAACTTGTAAGAAAAAAAGCATAACATGTTTTCAATGTGGCGAAAAAGGGTATTACAAGAAAGAAAGATCA
ATTCAAATAGGAGTGGCCTTCCACTCAGTTCAGTAG
Protein sequenceShow/hide protein sequence
MAPIDSETERCRRFMNGLRGEIKTSVLVDVALRVEKSLGVKRPGCELSKEEEKESIENLKNPRPVKDRVGIARKKPRCNECGKRHSGTCKKKSITCFQCGEKGYYKKERS
IQIGVAFHSVQ