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IVF0014159 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014159
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr03:11461904..11462320
RNA-Seq ExpressionIVF0014159
SyntenyIVF0014159
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032827.1 putative retrotransposon protein [Cucumis melo var. makuwa]2.08e-3357.69Show/hide
Query:  QARQEKFNIINTFVNCKLTRGSQVSPHVLKIKSYLEQLQRLGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNSEVLM
        +ARQ++FN I  F N KL + S VSPHVLKIKSYLEQL+RLGL+IS +L I                        KS  +LHGMLK + LNIKS+ EVLM
Subjt:  QARQEKFNIINTFVNCKLTRGSQVSPHVLKIKSYLEQLQRLGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNSEVLM

Query:  VQKGKNPKKRRLDQGKGNGKVVVKTSKVDA
        VQKGKN KKR  DQGKGN KV +KTSKVDA
Subjt:  VQKGKNPKKRRLDQGKGNGKVVVKTSKVDA

KAA0056624.1 hypothetical protein E6C27_scaffold288G001440 [Cucumis melo var. makuwa]9.08e-3759.7Show/hide
Query:  MVQEQARQEKFNIINTFVNCKLTRGSQVSPHVLKIKSYLEQLQRLGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNS
        M QEQARQE+ N I  FVN KL +GS VSP+VLK+KSY                              FVMSYNMH +EKSLT+LHGMLK +KLNIK +S
Subjt:  MVQEQARQEKFNIINTFVNCKLTRGSQVSPHVLKIKSYLEQLQRLGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNS

Query:  EVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDA
        EVLMVQKGKNPKKR  DQGKG  KVVVK SKVDA
Subjt:  EVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDA

KAA0063133.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.40e-90100Show/hide
Query:  MVQEQARQEKFNIINTFVNCKLTRGSQVSPHVLKIKSYLEQLQRLGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNS
        MVQEQARQEKFNIINTFVNCKLTRGSQVSPHVLKIKSYLEQLQRLGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNS
Subjt:  MVQEQARQEKFNIINTFVNCKLTRGSQVSPHVLKIKSYLEQLQRLGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNS

Query:  EVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDAPSTT
        EVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDAPSTT
Subjt:  EVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDAPSTT

KAA0066400.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.66e-3574.44Show/hide
Query:  LGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNSEVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDA
        LGLEIS +L ID+VLQ +P+ FDQFVM++NMHGME+SLT+LH MLKI++LNIKS+ EVLMVQKGKNPKKR  DQG G GKVVVK S+VDA
Subjt:  LGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNSEVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDA

KAA0066495.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.27e-3778.41Show/hide
Query:  LEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNSEVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDA
        LEIS ELTID+VLQSLPD FD++++SYNMHGM+KSLT+LHGMLK  KLNIKS+S+VLM+QKGKNPKK+  DQGKG GKV VKTSKVDA
Subjt:  LEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNSEVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDA

TrEMBL top hitse value%identityAlignment
A0A5A7UN47 Uncharacterized protein7.2e-2959.7Show/hide
Query:  MVQEQARQEKFNIINTFVNCKLTRGSQVSPHVLKIKSYLEQLQRLGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNS
        M QEQARQE+ N I  FVN KL +GS VSP+VLK+KSY                              FVMSYNMH +EKSLT+LHGMLK +KLNIK +S
Subjt:  MVQEQARQEKFNIINTFVNCKLTRGSQVSPHVLKIKSYLEQLQRLGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNS

Query:  EVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDA
        EVLMVQKGKNPKKR  DQGKG  KVVVK SKVDA
Subjt:  EVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDA

A0A5A7V4Y1 Retrovirus-related Pol polyprotein from transposon TNT 1-944.6e-68100Show/hide
Query:  MVQEQARQEKFNIINTFVNCKLTRGSQVSPHVLKIKSYLEQLQRLGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNS
        MVQEQARQEKFNIINTFVNCKLTRGSQVSPHVLKIKSYLEQLQRLGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNS
Subjt:  MVQEQARQEKFNIINTFVNCKLTRGSQVSPHVLKIKSYLEQLQRLGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNS

Query:  EVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDAPSTT
        EVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDAPSTT
Subjt:  EVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDAPSTT

A0A5A7VL77 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-2878.41Show/hide
Query:  LEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNSEVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDA
        LEIS ELTID+VLQSLPD FD++++SYNMHGM+KSLT+LHGMLK  KLNIKS+S+VLM+QKGKNPKK+  DQGKG GKV VKTSKVDA
Subjt:  LEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNSEVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDA

A0A5D3BP05 Retrovirus-related Pol polyprotein from transposon TNT 1-945.1e-2774.44Show/hide
Query:  LGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNSEVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDA
        LGLEIS +L ID+VLQ +P+ FDQFVM++NMHGME+SLT+LH MLKI++LNIKS+ EVLMVQKGKNPKKR  DQG G GKVVVK S+VDA
Subjt:  LGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNSEVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDA

A0A6D2I0Z8 CCHC-type domain-containing protein7.4e-2649.64Show/hide
Query:  MVQEQARQEKFNIINTFVNCKLTRGSQVSPHVLKIKSYLEQLQRLGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNI-KSN
        M QEQAR E++  + T + CKL + S VSPHV+K+  Y++ L +L   IS EL  D++LQSLP +FDQFVM+YNM+ M K+LT+LHGMLK ++ NI K  
Subjt:  MVQEQARQEKFNIINTFVNCKLTRGSQVSPHVLKIKSYLEQLQRLGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNI-KSN

Query:  SEVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDAPSTT
          VLMVQ GK  KK   D+GKG    V   S  +    T
Subjt:  SEVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDAPSTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCAAGAGCAAGCAAGACAAGAGAAGTTCAACATCATTAACACTTTTGTCAATTGCAAACTGACTAGGGGTAGTCAAGTTAGCCCTCATGTTCTCAAGATAAAGAG
TTATCTTGAGCAACTTCAAAGGCTAGGACTTGAGATCAGTTGTGAGCTTACGATTGATATTGTTCTCCAATCCCTACCTGATAATTTTGATCAGTTTGTAATGAGTTACA
ATATGCATGGGATGGAGAAGAGTTTGACTAAGTTGCATGGGATGTTGAAAATTTCTAAGTTGAACATCAAGTCAAATTCTGAGGTTTTGATGGTGCAAAAAGGGAAGAAT
CCCAAGAAGAGGAGATTGGATCAAGGAAAGGGTAATGGCAAAGTTGTTGTCAAGACATCAAAAGTTGATGCTCCTTCTACAACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTCAAGAGCAAGCAAGACAAGAGAAGTTCAACATCATTAACACTTTTGTCAATTGCAAACTGACTAGGGGTAGTCAAGTTAGCCCTCATGTTCTCAAGATAAAGAG
TTATCTTGAGCAACTTCAAAGGCTAGGACTTGAGATCAGTTGTGAGCTTACGATTGATATTGTTCTCCAATCCCTACCTGATAATTTTGATCAGTTTGTAATGAGTTACA
ATATGCATGGGATGGAGAAGAGTTTGACTAAGTTGCATGGGATGTTGAAAATTTCTAAGTTGAACATCAAGTCAAATTCTGAGGTTTTGATGGTGCAAAAAGGGAAGAAT
CCCAAGAAGAGGAGATTGGATCAAGGAAAGGGTAATGGCAAAGTTGTTGTCAAGACATCAAAAGTTGATGCTCCTTCTACAACCTAG
Protein sequenceShow/hide protein sequence
MVQEQARQEKFNIINTFVNCKLTRGSQVSPHVLKIKSYLEQLQRLGLEISCELTIDIVLQSLPDNFDQFVMSYNMHGMEKSLTKLHGMLKISKLNIKSNSEVLMVQKGKN
PKKRRLDQGKGNGKVVVKTSKVDAPSTT