CuGenDBv2

Gene ID	IVF0014210
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PMD domain-containing protein
Genome location	chr03:10176817..10178101
RNA-Seq Expression	IVF0014210
Synteny	IVF0014210
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031751.1 hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]

4.87e-60

74.07

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Query:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG
        M PAIT DNIL+ WRICTR N LSELYL   SLEPCKHVTQ+F +WW TKH T FE NRHHLVS VIPP  QP+LPKNR SNLGGK+IRLVE MA  LE 
Subjt:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG

Query:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR
        +VK+HKDESD+SKSD +WKRPLKK KVSGD   GR
Subjt:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR

KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]

1.97e-57

72.59

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Query:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG
        M+PAIT DNIL+ WRICTR N LSELYL   SLEPCKHVTQ+F +WW TKH T FE NRHHLVS  IPP  QP+LPKNR SNLGGK+IRLVE MA  LE 
Subjt:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG

Query:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR
        +VK+ KDESD+SKSD +WKRPLKK KVSGD   GR
Subjt:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR

KAA0050516.1 hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]

1.03e-57

73.33

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Query:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG
        M PAIT DNIL+  RICTRCN LSELYL   SLEPCKHVTQQF +WW TKH T FE NRHHLV+ VIP   QP+LPKNR SNLGGK+IRLVE MA  LE 
Subjt:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG

Query:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR
        +VK+HKDES+NSKSD +WKRPLKK KVSGD  +GR
Subjt:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR

KAA0054204.1 hypothetical protein E6C27_scaffold131G001410 [Cucumis melo var. makuwa]

8.37e-58

71.85

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Query:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG
        M PAI  +NIL+ WRICTR N LSELYL   SLEPCKHVTQ+F +WW TKH T FE NRHHLVS VIPP  QP+LPKNR SNLGGK+IRLVE M   LE 
Subjt:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG

Query:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR
        +VK+HKDESDNSKSD + KRPLKK KVSGD   GR
Subjt:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR

TYK16513.1 hypothetical protein E5676_scaffold21G003220 [Cucumis melo var. makuwa]

6.48e-61

71.85

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Query:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG
        M PAIT +NIL+ WRICTR N LS+LYL   SLEPCKHVTQQF NWW T+H T FE NRHHL+S  IPP  QPKLPKNR SNLGGK+IRLVEVM   LE 
Subjt:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG

Query:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR
        +VK+HKDESD+SKSD +WKRPLKK KVS D+  GR
Subjt:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SQC9 PMD domain-containing protein

2.2e-49

74.07

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Query:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG
        M PAIT DNIL+ WRICTR N LSELYL   SLEPCKHVTQ+F +WW TKH T FE NRHHLVS VIPP  QP+LPKNR SNLGGK+IRLVE MA  LE 
Subjt:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG

Query:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR
        +VK+HKDESD+SKSD +WKRPLKK KVSGD   GR
Subjt:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR

A0A5A7TX42 Uncharacterized protein

2.4e-48

72.59

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Query:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG
        M+PAIT DNIL+ WRICTR N LSELYL   SLEPCKHVTQ+F +WW TKH T FE NRHHLVS  IPP  QP+LPKNR SNLGGK+IRLVE MA  LE 
Subjt:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG

Query:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR
        +VK+ KDESD+SKSD +WKRPLKK KVSGD   GR
Subjt:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR

A0A5A7TZN9 Putative mitochondrial protein

2.7e-47

71.85

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Query:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG
        M PAIT D+IL+ WRICTR N LSELYL   SLEPCKHVTQQF +WW T+H+T FE NRHHLVS VIPP  QP+L KNR SNLGGK+IRLVE MA  L+ 
Subjt:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG

Query:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR
        +VKKHKDESD+SKS  +WKRPLKK KVSGD   GR
Subjt:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR

A0A5A7U8L3 PMD domain-containing protein

1.4e-48

73.33

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Query:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG
        M PAIT DNIL+  RICTRCN LSELYL   SLEPCKHVTQQF +WW TKH T FE NRHHLV+ VIP   QP+LPKNR SNLGGK+IRLVE MA  LE 
Subjt:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG

Query:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR
        +VK+HKDES+NSKSD +WKRPLKK KVSGD  +GR
Subjt:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR

A0A5D3CXA5 Uncharacterized protein

7.1e-48

71.85

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Query:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG
        M PAIT +NIL+ WRICTR N LS+LYL   SLEPCKHVTQQF NWW T+H T FE NRHHL+S  IPP  QPKLPKNR SNLGGK+IRLVEVM   LE 
Subjt:  MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEG

Query:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR
        +VK+HKDESD+SKSD +WKRPLKK KVS D+  GR
Subjt:  KVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACACCTGCGATCACATTCGATAATATATTACATCAGTGGAGGATATGTACGAGGTGCAACTTTTTGTCTGAGTTATACTTGCTCGTCCTTTCATTAGAGCCTTGCAA
ACATGTGACGCAACAATTTAAAAATTGGTGGGCCACGAAGCACGAGACCTGTTTTGAGGTTAATAGACACCATTTGGTGAGCAAAGTCATTCCTCCTCTATTACAACCCA
AACTACCCAAGAACCGTAGAAGCAACCTAGGTGGTAAACAAATTCGCTTGGTTGAGGTGATGGCTTCTACCCTCGAGGGAAAGGTGAAGAAGCATAAAGATGAGAGCGAT
AATAGCAAAAGCGATAGTTATTGGAAGAGACCTTTGAAGAAAACAAAAGTATCAGGTGATGATCTTAGCGGAAGGAACTGCTATGGGAATCCCTGA

mRNA sequence

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GGTAAATCTTTTCCACATATCAAACACCATCCAAATGACTTAATTATAGAGGAGTACAAAAATCTTTCAATCACTATATACTACAGTTTAGAAACTTTGAATCTAAAAAG
ATATATTAAACAGTATGTTATAAACTAAGAGTTAGTGTTAACAGATAGACAAAGATAAAGTAATATACAGATAGACATAAACAAAGATAGAGCACTAGAGAAAGATAGAC
AAATATAGATAAATATAGACAAAGATAGAAAAAATAAACCACTATACAGATAGACATTGACAAAGATGAACAAATATAGACAAAGATAGAACACTAGACATAAAAAAATA
TAAACAAATATATACAAATATAAACAAAAATAAAGCACTATACAGATAGACATTGACATTATTATTCACTTTTTTTCGTTCTTTATTTGTTTTTCTTCTGCCTTTCCTTT
TGATTTGATTGCTTTAGCTGGTTGATGTTTGCTTTTTGCTCACTTTCTATTATGTCCATGGTTGGTTAGTCCATTATTTTGGCATGTATTATCCATTTCCAATAGAAGTT
TGAGGTCCCAATATGGCTAACTTTTTCGACGAAGGCGGGTTTATTTATTTTGGAGAATATGAGGCATGAGAACTGATCCATTATGGTACATGAATTCAGTGGCACGCTAG
CCTTCAGAACCAGAATAAACATGAACGCATGGCTAATACCTATGACTCATCGTTTCTACAGACTTCTTATTTCGTAAGCATGTGCTTCTGTTACTTGTCATCCCACTGTG
AAAGTTTTTCGATCATAACATCATACAGTCCGTATCGATTTAAACGATAGTTTGGCTTTTACTAGGATATCTCTAATGATATAAGAGGCATGACACCTGCGATCACATTC
GATAATATATTACATCAGTGGAGGATATGTACGAGGTGCAACTTTTTGTCTGAGTTATACTTGCTCGTCCTTTCATTAGAGCCTTGCAAACATGTGACGCAACAATTTAA
AAATTGGTGGGCCACGAAGCACGAGACCTGTTTTGAGGTTAATAGACACCATTTGGTGAGCAAAGTCATTCCTCCTCTATTACAACCCAAACTACCCAAGAACCGTAGAA
GCAACCTAGGTGGTAAACAAATTCGCTTGGTTGAGGTGATGGCTTCTACCCTCGAGGGAAAGGTGAAGAAGCATAAAGATGAGAGCGATAATAGCAAAAGCGATAGTTAT
TGGAAGAGACCTTTGAAGAAAACAAAAGTATCAGGTGATGATCTTAGCGGAAGGAACTGCTATGGGAATCCCTGA

Protein sequence

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MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEGKVKKHKDESD
NSKSDSYWKRPLKKTKVSGDDLSGRNCYGNP

IVF0014210 (gene) of Melon (IVF77) v1 genome