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IVF0014247 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014247
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionProtein LTV1-like protein
Genome locationchr11:3361660..3361875
RNA-Seq ExpressionIVF0014247
SyntenyIVF0014247
Gene Ontology termsGO:0000056 - ribosomal small subunit export from nucleus (biological process)
GO:0042274 - ribosomal small subunit biogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045822.1 protein LTV1-like protein [Cucumis melo var. makuwa]4.75e-3888.73Show/hide
Query:  MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGKGVEDKEIL
        MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILS  G++D+ + 
Subjt:  MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGKGVEDKEIL

TYJ99460.1 protein LTV1-like protein [Cucumis melo var. makuwa]5.68e-3588.06Show/hide
Query:  VELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGKGVEDKEIL
        VELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILS  G++D+ + 
Subjt:  VELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGKGVEDKEIL

XP_008448616.1 PREDICTED: protein LTV1 homolog [Cucumis melo]3.83e-2575Show/hide
Query:  MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEIL
         D  +    ASSN    DCDEPCIA+EDESLAQKLNHAL NHSKDDLELEQG KAPA+ILSGK GVEDKE+L
Subjt:  MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEIL

XP_011650323.1 protein LTV1 homolog [Cucumis sativus]5.26e-2573.61Show/hide
Query:  MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEIL
         D  +    ASS+S G DCDEPCIA+E+ESLAQKLNHAL NHSKDDLELEQG KAPA+ILSGK G EDKE+L
Subjt:  MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEIL

XP_038898842.1 protein LTV1 homolog [Benincasa hispida]1.16e-2268.06Show/hide
Query:  MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEIL
         D  +    ASS++ G DCDEPCIA+EDESLAQKLNHAL NHSKD+ ELEQG KAPA+IL+GK G+ED E+L
Subjt:  MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEIL

TrEMBL top hitse value%identityAlignment
A0A0A0L517 Uncharacterized protein1.6e-1974.65Show/hide
Query:  DAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEIL
        D  +    ASS+S G DCDEPCIA+E+ESLAQKLNHAL NHSKDDLELEQG KAPA+ILSGK G EDKE+L
Subjt:  DAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEIL

A0A1S3BKZ8 protein LTV1 homolog1.2e-1976.06Show/hide
Query:  DAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEIL
        D  +    ASSN    DCDEPCIA+EDESLAQKLNHAL NHSKDDLELEQG KAPA+ILSGK GVEDKE+L
Subjt:  DAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEIL

A0A5A7TR06 Protein LTV1-like protein2.0e-2792.65Show/hide
Query:  MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGKGVEDK
        MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILS  G++D+
Subjt:  MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGKGVEDK

A0A5D3BI16 Protein LTV1-like protein2.5e-2592.19Show/hide
Query:  VELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGKGVEDK
        VELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILS  G++D+
Subjt:  VELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGKGVEDK

A0A5D3CI19 Protein LTV1-like protein1.2e-1976.06Show/hide
Query:  DAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEIL
        D  +    ASSN    DCDEPCIA+EDESLAQKLNHAL NHSKDDLELEQG KAPA+ILSGK GVEDKE+L
Subjt:  DAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGK-GVEDKEIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCAGCTGTTGAACTAGGACTAGCATCTAGCAACAGTGGTGGCATTGATTGTGACGAACCCTGTATAGCCAAAGAGGACGAGTCCCTTGCCCAAAAGCTCAATCA
TGCCCTTAGCAATCATAGTAAGGATGATTTGGAGCTTGAGCAAGGATGTAAGGCTCCAGCGAATATATTGAGTGGTAAAGGAGTAGAAGATAAAGAGATTTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGCAGCTGTTGAACTAGGACTAGCATCTAGCAACAGTGGTGGCATTGATTGTGACGAACCCTGTATAGCCAAAGAGGACGAGTCCCTTGCCCAAAAGCTCAATCA
TGCCCTTAGCAATCATAGTAAGGATGATTTGGAGCTTGAGCAAGGATGTAAGGCTCCAGCGAATATATTGAGTGGTAAAGGAGTAGAAGATAAAGAGATTTTATAG
Protein sequenceShow/hide protein sequence
MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGKGVEDKEIL