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IVF0014287 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014287
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr03:17719135..17720277
RNA-Seq ExpressionIVF0014287
SyntenyIVF0014287
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047411.1 gag/pol protein [Cucumis melo var. makuwa]1.81e-3559.4Show/hide
Query:  LSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASSTSVYKSGIVLHTFSQSVGREASS
        LS RTS  R RK+RARMP  QFF+RG+K+   TVSLFC+VLVI  S+FGTHTPRTSVYIL IVP                       H F QS+ R+ASS
Subjt:  LSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASSTSVYKSGIVLHTFSQSVGREASS

Query:  LEGELRCNPKQSKRWRMLFQLVANACPVSETIE
        LEGELRC+PK+SKRW MLFQ V NA  VSET E
Subjt:  LEGELRCNPKQSKRWRMLFQLVANACPVSETIE

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]3.75e-3362.6Show/hide
Query:  SGLSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASS----------------TSVYK
        +GLSSRTSGVR RKVRARMPR  FF+R +KS   TVSLFC+V VIS SSFGT  PRTSVY+  IVP PFSQ IG E SS                TS+Y 
Subjt:  SGLSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASS----------------TSVYK

Query:  SGIVLHTFSQSVGREASSLEGEL
         GIV H FSQ +GREA SLEGEL
Subjt:  SGIVLHTFSQSVGREASSLEGEL

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]2.08e-3357.34Show/hide
Query:  GERSSG--LSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASSTSVYKSGIVLHTFSQ
        GE S G  LSSR S V PRKVR RMP  QFFY G+K+G   VS FC+VLVIS SSF THT RTSVYI                        GIV H+FSQ
Subjt:  GERSSG--LSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASSTSVYKSGIVLHTFSQ

Query:  SVGREASSLEGELRCNPKQSKRWRMLFQLVANACPVSETIENA
        S+GREASS +GE RCNPK+SK W +LFQ VANA PVS  I++A
Subjt:  SVGREASSLEGELRCNPKQSKRWRMLFQLVANACPVSETIENA

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]4.15e-3261.79Show/hide
Query:  SGLSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASS----------------TSVYK
        +GLSSRTSGVR RKVRARMPR  FF+  +KS   TVSLFC+V VIS SSF T  PRTSVY+  IVP PFSQ IG E SS                TS+Y 
Subjt:  SGLSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASS----------------TSVYK

Query:  SGIVLHTFSQSVGREASSLEGEL
         GIV H FSQ +GREASSLEGEL
Subjt:  SGIVLHTFSQSVGREASSLEGEL

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]1.52e-2545.09Show/hide
Query:  LPTSGERSSG--------------LSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQ-------
        LPTSGERSSG              LSSRTSG RP+K RARMP+ QF   G KS   TVS  C VLV S S FG  TPRTS +   ++P  FS+       
Subjt:  LPTSGERSSG--------------LSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQ-------

Query:  ----------------------SIGQEASS--TSVYKSGIVLHTFSQSVGREASSLEGELRCNPKQSKRWRML
                              S+    S+  TS + SG++  TFS  +GREASSLEGEL C+PK SKRW ML
Subjt:  ----------------------SIGQEASS--TSVYKSGIVLHTFSQSVGREASSLEGELRCNPKQSKRWRML

TrEMBL top hitse value%identityAlignment
A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed1.8e-2857.34Show/hide
Query:  GERSSG--LSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASSTSVYKSGIVLHTFSQ
        GE S G  LSSR S V PRKVR RMP  QFFY G+K+G   VS FC+VLVIS SSF THT RTSVYI                        GIV H+FSQ
Subjt:  GERSSG--LSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASSTSVYKSGIVLHTFSQ

Query:  SVGREASSLEGELRCNPKQSKRWRMLFQLVANACPVSETIENA
        S+GREASS +GE RCNPK+SK W +LFQ VANA PVS  I++A
Subjt:  SVGREASSLEGELRCNPKQSKRWRMLFQLVANACPVSETIENA

A0A5A7VGQ5 Uncharacterized protein4.0e-2862.6Show/hide
Query:  SGLSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASS----------------TSVYK
        +GLSSRTSGVR RKVRARMPR  FF+R +KS   TVSLFC+V VIS SSFGT  PRTSVY+  IVP PFSQ IG E SS                TS+Y 
Subjt:  SGLSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASS----------------TSVYK

Query:  SGIVLHTFSQSVGREASSLEGEL
         GIV H FSQ +GREA SLEGEL
Subjt:  SGIVLHTFSQSVGREASSLEGEL

A0A5D3BG85 Uncharacterized protein4.5e-2761.79Show/hide
Query:  SGLSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASS----------------TSVYK
        +GLSSRTSGVR RKVRARMPR  FF+  +KS   TVSLFC+V VIS SSF T  PRTSVY+  IVP PFSQ IG E SS                TS+Y 
Subjt:  SGLSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASS----------------TSVYK

Query:  SGIVLHTFSQSVGREASSLEGEL
         GIV H FSQ +GREASSLEGEL
Subjt:  SGIVLHTFSQSVGREASSLEGEL

A0A5D3CUK8 Gag/pol protein9.6e-3059.4Show/hide
Query:  LSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASSTSVYKSGIVLHTFSQSVGREASS
        LS RTS  R RK+RARMP  QFF+RG+K+   TVSLFC+VLVI  S+FGTHTPRTSVYIL IVP                       H F QS+ R+ASS
Subjt:  LSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASSTSVYKSGIVLHTFSQSVGREASS

Query:  LEGELRCNPKQSKRWRMLFQLVANACPVSETIE
        LEGELRC+PK+SKRW MLFQ V NA  VSET E
Subjt:  LEGELRCNPKQSKRWRMLFQLVANACPVSETIE

A0A5D3DFP2 Uncharacterized protein1.6e-2145.09Show/hide
Query:  LPTSGERSS--------------GLSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQ-------
        LPTSGERSS              GLSSRTSG RP+K RARMP+ QF   G KS   TVS  C VLV S S FG  TPRTS +   ++P  FS+       
Subjt:  LPTSGERSS--------------GLSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQ-------

Query:  -----------------SIGQEA-------SSTSVYKSGIVLHTFSQSVGREASSLEGELRCNPKQSKRWRML
                          IG ++         TS + SG++  TFS  +GREASSLEGEL C+PK SKRW ML
Subjt:  -----------------SIGQEA-------SSTSVYKSGIVLHTFSQSVGREASSLEGELRCNPKQSKRWRML

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAATGCTCTTCCAACGAGTGGCGAACGCTCGTCCGGTCTAAGCTCAAGAACTTCTGGTGTCCGTCCAAGGAAAGTGCGAGCGAGAATGCCACGGGCTCAGTTTTT
CTATCGCGGGCTAAAAAGCGGTCTTGTAACGGTTTCTTTGTTTTGTATTGTGTTGGTCATAAGCACTTCGAGCTTCGGGACTCATACTCCAAGGACTTCAGTCTACATTC
TTGACATCGTTCCTCGCCCATTTTCCCAAAGTATAGGTCAAGAAGCGAGCTCGACTTCAGTTTACAAATCTGGCATCGTTCTTCACACATTTTCTCAAAGTGTAGGTCGG
GAAGCGAGTTCGTTGGAGGGAGAACTAAGGTGTAACCCGAAACAATCAAAAAGATGGCGAATGCTTTTCCAACTAGTGGCGAATGCTTGTCCGGTGTCAGAAACCATTGA
AAATGCACTGCCAGCGAAGGAAACAGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAATGCTCTTCCAACGAGTGGCGAACGCTCGTCCGGTCTAAGCTCAAGAACTTCTGGTGTCCGTCCAAGGAAAGTGCGAGCGAGAATGCCACGGGCTCAGTTTTT
CTATCGCGGGCTAAAAAGCGGTCTTGTAACGGTTTCTTTGTTTTGTATTGTGTTGGTCATAAGCACTTCGAGCTTCGGGACTCATACTCCAAGGACTTCAGTCTACATTC
TTGACATCGTTCCTCGCCCATTTTCCCAAAGTATAGGTCAAGAAGCGAGCTCGACTTCAGTTTACAAATCTGGCATCGTTCTTCACACATTTTCTCAAAGTGTAGGTCGG
GAAGCGAGTTCGTTGGAGGGAGAACTAAGGTGTAACCCGAAACAATCAAAAAGATGGCGAATGCTTTTCCAACTAGTGGCGAATGCTTGTCCGGTGTCAGAAACCATTGA
AAATGCACTGCCAGCGAAGGAAACAGGTTAA
Protein sequenceShow/hide protein sequence
MANALPTSGERSSGLSSRTSGVRPRKVRARMPRAQFFYRGLKSGLVTVSLFCIVLVISTSSFGTHTPRTSVYILDIVPRPFSQSIGQEASSTSVYKSGIVLHTFSQSVGR
EASSLEGELRCNPKQSKRWRMLFQLVANACPVSETIENALPAKETG