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IVF0014368 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014368
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein
Genome locationchr01:3723643..3724068
RNA-Seq ExpressionIVF0014368
SyntenyIVF0014368
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045605.1 Gag-pro-like protein [Cucumis melo var. makuwa]3.42e-7784.29Show/hide
Query:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK
        MSYT+L PQLLKSHQVAIVPQEPLQPPYPKWY+PNA+CEYHAG + HS  NCFPLKAKVQSLVK GWLKFKKT EE DVNQNPLPNHEGPAINVVDTFT+
Subjt:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK

Query:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
        R KN V  +TTSMNTLFQIL GAGYLSPRFNND+ EK GC
Subjt:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
KAA0047385.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]1.36e-8385Show/hide
Query:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK
        MSYTKL P+LLKSHQVAIVPQEPLQPPYPKWY+PN KCEYH G + H T N FPLKAKVQSLVK GWLKFKKT EE DVNQNPLPNHEGPAIN+VDTFT+
Subjt:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK

Query:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
        RYKNKVC +TTS+NTLFQILR AGYLSPRFNNDE EKFGC
Subjt:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
KAA0055146.1 uncharacterized protein E6C27_scaffold231G00770 [Cucumis melo var. makuwa]5.79e-8087.14Show/hide
Query:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK
        MSYT+L PQLLKSHQVAIVPQEPLQPPYPKWY+PN KCEYHAG + HST NCFPLKAKVQSLVK GWLKFKK  EE DVNQNPLPNHEGPAIN+VDTFT+
Subjt:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK

Query:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
        RYKNKVC +TTSMNTLFQILR AGYLSPRFNNDE EKFGC
Subjt:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
KAA0056811.1 Gag-pro-like protein [Cucumis melo var. makuwa]1.52e-8085Show/hide
Query:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK
        MSYT+L PQLLKSHQVAIVPQEPLQPPYPKWY+PN KCEYHAG   HST NCFPLK KVQSLVK GWLKFKKT EE +VNQNPLPNHEGPAIN+VDT T+
Subjt:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK

Query:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
        RYKNKVC +TTSMNTLFQILR  GYLSPRFNNDE EKFGC
Subjt:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
KAA0059164.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]1.37e-104100Show/hide
Query:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK
        MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK
Subjt:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK

Query:  RYKNKVCMTTSMNTLFQILRGAGYLSPRFNNDEEEKFGCFI
        RYKNKVCMTTSMNTLFQILRGAGYLSPRFNNDEEEKFGCFI
Subjt:  RYKNKVCMTTSMNTLFQILRGAGYLSPRFNNDEEEKFGCFI
TrEMBL top hitse value%identityAlignment
A0A5A7TW53 Gag-pro-like protein5.0e-6284.29Show/hide
Query:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK
        MSYT+L PQLLKSHQVAIVPQEPLQPPYPKWY+PNA+CEYHAG + HS  NCFPLKAKVQSLVK GWLKFKKT EE DVNQNPLPNHEGPAINVVDTFT+
Subjt:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK

Query:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
        R KN V  +TTSMNTLFQIL GAGYLSPRFNND+ EK GC
Subjt:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
A0A5A7ULI2 Retrotrans_gag domain-containing protein7.5e-6687.14Show/hide
Query:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK
        MSYT+L PQLLKSHQVAIVPQEPLQPPYPKWY+PN KCEYHAG + HST NCFPLKAKVQSLVK GWLKFKK  EE DVNQNPLPNHEGPAIN+VDTFT+
Subjt:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK

Query:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
        RYKNKVC +TTSMNTLFQILR AGYLSPRFNNDE EKFGC
Subjt:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
A0A5A7UVQ7 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein2.7e-79100Show/hide
Query:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK
        MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK
Subjt:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK

Query:  RYKNKVCMTTSMNTLFQILRGAGYLSPRFNNDEEEKFGCFI
        RYKNKVCMTTSMNTLFQILRGAGYLSPRFNNDEEEKFGCFI
Subjt:  RYKNKVCMTTSMNTLFQILRGAGYLSPRFNNDEEEKFGCFI
A0A5D3BJJ2 Gag-pro-like protein3.5e-6385Show/hide
Query:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK
        MSYT+L PQLLKSHQVAIVPQEPLQPPYPKWY+PN KCEYHAG   HST NCFPLK KVQSLVK GWLKFKKT EE +VNQNPLPNHEGPAIN+VDT T+
Subjt:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK

Query:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
        RYKNKVC +TTSMNTLFQILR  GYLSPRFNNDE EKFGC
Subjt:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
A0A5D3CRP8 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein9.2e-6485Show/hide
Query:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK
        MSYTKL P+LLKSHQVAIVPQEPLQPPYPKWY+PN KCEYH G + H T N FPLKAKVQSLVK GWLKFKKT EE DVNQNPLPNHEGPAIN+VDTFT+
Subjt:  MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTK

Query:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
        RYKNKVC +TTS+NTLFQILR AGYLSPRFNNDE EKFGC
Subjt:  RYKNKVC-MTTSMNTLFQILRGAGYLSPRFNNDEEEKFGC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTATACAAAGCTTCCACCTCAACTTCTAAAGAGTCATCAAGTGGCTATCGTACCACAAGAGCCTTTGCAACCACCATATCCTAAGTGGTATGAACCCAACGCAAA
ATGTGAATATCATGCTGGGGCACTTGAGCATTCTACGAATAATTGTTTTCCTTTGAAAGCTAAAGTGCAAAGTCTAGTCAAGGACGGATGGTTGAAATTCAAGAAGACAA
GAGAAGAGCATGACGTTAACCAGAACCCTTTACCAAATCATGAGGGTCCTGCCATAAATGTTGTTGACACATTCACGAAAAGATACAAGAATAAGGTGTGTATGACTACT
TCAATGAATACACTTTTCCAAATCCTTCGTGGAGCTGGATATTTGTCACCAAGATTTAACAATGATGAGGAGGAGAAGTTTGGATGCTTCATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTATACAAAGCTTCCACCTCAACTTCTAAAGAGTCATCAAGTGGCTATCGTACCACAAGAGCCTTTGCAACCACCATATCCTAAGTGGTATGAACCCAACGCAAA
ATGTGAATATCATGCTGGGGCACTTGAGCATTCTACGAATAATTGTTTTCCTTTGAAAGCTAAAGTGCAAAGTCTAGTCAAGGACGGATGGTTGAAATTCAAGAAGACAA
GAGAAGAGCATGACGTTAACCAGAACCCTTTACCAAATCATGAGGGTCCTGCCATAAATGTTGTTGACACATTCACGAAAAGATACAAGAATAAGGTGTGTATGACTACT
TCAATGAATACACTTTTCCAAATCCTTCGTGGAGCTGGATATTTGTCACCAAGATTTAACAATGATGAGGAGGAGAAGTTTGGATGCTTCATCTAA
Protein sequenceShow/hide protein sequence
MSYTKLPPQLLKSHQVAIVPQEPLQPPYPKWYEPNAKCEYHAGALEHSTNNCFPLKAKVQSLVKDGWLKFKKTREEHDVNQNPLPNHEGPAINVVDTFTKRYKNKVCMTT
SMNTLFQILRGAGYLSPRFNNDEEEKFGCFI