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IVF0014385 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014385
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr06:12267168..12268100
RNA-Seq ExpressionIVF0014385
SyntenyIVF0014385
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033551.1 retrotransposon protein [Cucumis melo var. makuwa]1.66e-6357.48Show/hide
Query:  TVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHWVRGARAETFADISLNVPT---DNDSIPAEDGMGTEFPTMCSPRMNMLPEDMMG
        TVIE+RIKLLKKTF AI E+RGP  S F WNDDVKCII +RDVF+HWV    A   A   LN P    D   +P +D +  EFP MCSPRMNM PE+MMG
Subjt:  TVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHWVRGARAETFADISLNVPT---DNDSIPAEDGMGTEFPTMCSPRMNMLPEDMMG

Query:  DRSGRSTPQRMA---WARTSLLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVIY--------------KCVMVVSQKVSFMRSFIKMSD
         RSGRS   RM      R   + QFETY LI ECM+AATDQLRTI E P+K +S +DAMA QVI               KCVM+V+QKVS MRSFIKM D
Subjt:  DRSGRSTPQRMA---WARTSLLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVIY--------------KCVMVVSQKVSFMRSFIKMSD

Query:  LMKPAYCRVVLGGE
         MK  Y R++LGG 
Subjt:  LMKPAYCRVVLGGE

KAA0037842.1 retrotransposon protein [Cucumis melo var. makuwa]3.29e-8399.19Show/hide
Query:  MTDCSLMTTVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHWVRGARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPRMNMLP
        MTDCSLMTTVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHWVRGARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPRMNMLP
Subjt:  MTDCSLMTTVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHWVRGARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPRMNMLP

Query:  EDMMGDRSGRSTPQRMAWARTSLL
        EDMMGDRSGRSTPQRMAWAR+SLL
Subjt:  EDMMGDRSGRSTPQRMAWARTSLL

KAA0055070.1 retrotransposon protein [Cucumis melo var. makuwa]6.11e-5246.79Show/hide
Query:  LLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHWVR-----------------------------GARAETFADISLNVPTDNDSIPAEDGMGTE
        +LKKTF AIVE+RGP  S F WND +KCII +RDVF+HWVR                             GA +ETFADI  NV  DN+S  AEDG+  E
Subjt:  LLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHWVR-----------------------------GARAETFADISLNVPTDNDSIPAEDGMGTE

Query:  FPTMCSPRMNMLPEDMMGDRSGRSTPQRMAWA---RTSLLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVIYKCVMVVSQKVSFMRSFI
        FP MCSPRMNM PEDM+G RS RS+  R   +   R   + QFET+ LICE        +  +   P   +++K         KC+M+++QKVS MRSFI
Subjt:  FPTMCSPRMNMLPEDMMGDRSGRSTPQRMAWA---RTSLLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVIYKCVMVVSQKVSFMRSFI

Query:  KMSDLMKPAYCRVVLGGE
        KMSD M  AYC+V+LGG+
Subjt:  KMSDLMKPAYCRVVLGGE

KAA0064184.1 retrotransposon protein [Cucumis melo var. makuwa]1.49e-5953.42Show/hide
Query:  MTDCSLMTTVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHW-----VRGARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPR
        M  CSLMTT+IESRIKLLKKTF AI E+RGP           K ++ K D  +H        GA AETFADI  NV TDNDS+PAEDG+  EFP MC PR
Subjt:  MTDCSLMTTVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHW-----VRGARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPR

Query:  MNMLPEDMMGDRSGRSTPQRMAWARTS---LLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVIY--------------KCVMVVSQKVS
        MNM P+DMM  RS +S+  RM  +R      + Q ETY LI +CM+ ATDQLRTI E P+KA+S++D M  QVI               KC+M+V+QKVS
Subjt:  MNMLPEDMMGDRSGRSTPQRMAWARTS---LLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVIY--------------KCVMVVSQKVS

Query:  FMRSFIKMSDLMKPAYCRV
          RSFIKM D MK AYC+V
Subjt:  FMRSFIKMSDLMKPAYCRV

TYK02844.1 retrotransposon protein [Cucumis melo var. makuwa]5.17e-6153.42Show/hide
Query:  MTDCSLMTTVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHW-----VRGARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPR
        M  CSLMTT+IESRIKLLKKTF AI E+RGP           K ++ K D  +H        GA AETFADI  NV TDNDS+PAEDG+  EFP MC PR
Subjt:  MTDCSLMTTVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHW-----VRGARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPR

Query:  MNMLPEDMMGDRSGRSTPQRMAWARTS---LLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVIY--------------KCVMVVSQKVS
        MNM P+DMM  RS +S+  RM  +R      + Q ETY LI +CM+ ATDQLRTI E P+KA+S++D M  QVI               KC+M+V+QKVS
Subjt:  MNMLPEDMMGDRSGRSTPQRMAWARTS---LLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVIY--------------KCVMVVSQKVS

Query:  FMRSFIKMSDLMKPAYCRV
          RSFIKM D MK AYC+V
Subjt:  FMRSFIKMSDLMKPAYCRV

TrEMBL top hitse value%identityAlignment
A0A5A7T2Z5 Retrotransposon protein2.0e-6499.19Show/hide
Query:  MTDCSLMTTVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHWVRGARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPRMNMLP
        MTDCSLMTTVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHWVRGARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPRMNMLP
Subjt:  MTDCSLMTTVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHWVRGARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPRMNMLP

Query:  EDMMGDRSGRSTPQRMAWARTSLL
        EDMMGDRSGRSTPQRMAWAR+SLL
Subjt:  EDMMGDRSGRSTPQRMAWARTSLL

A0A5A7VAC3 Retrotransposon protein1.6e-4853.42Show/hide
Query:  MTDCSLMTTVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNH-----WVRGARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPR
        M  CSLMTT+IESRIKLLKKTF AI E+RGP           K ++ K D  +H        GA AETFADI  NV TDNDS+PAEDG+  EFP MC PR
Subjt:  MTDCSLMTTVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNH-----WVRGARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPR

Query:  MNMLPEDMMGDRSGRSTPQRMAWARTS---LLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVI--------------YKCVMVVSQKVS
        MNM P+DMM  RS +S+  RM  +R      + Q ETY LI +CM+ ATDQLRTI E P+KA+S++D M  QVI               KC+M+V+QKVS
Subjt:  MNMLPEDMMGDRSGRSTPQRMAWARTS---LLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVI--------------YKCVMVVSQKVS

Query:  FMRSFIKMSDLMKPAYCRV
          RSFIKM D MK AYC+V
Subjt:  FMRSFIKMSDLMKPAYCRV

A0A5D3B9T0 Retrotransposon protein2.9e-5057.75Show/hide
Query:  TVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHWVRGARAETFADISLNVP---TDNDSIPAEDGMGTEFPTMCSPRMNMLPEDMMG
        TVIE+RIKLLKKTF AI E+RGP  S F WNDDVKCII +RDVF+HWV    A   A   LN P    D   +P +D +  EFP MCSPRMNM PE+MMG
Subjt:  TVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHWVRGARAETFADISLNVP---TDNDSIPAEDGMGTEFPTMCSPRMNMLPEDMMG

Query:  DRSGRSTPQRM---AWARTSLLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVI--------------YKCVMVVSQKVSFMRSFIKMSD
         RSGRS   RM      R   + QFETY LI ECM+AATDQLRTI E P+K +S +DAMA QVI               KCVM+V+QKVS MRSFIKM D
Subjt:  DRSGRSTPQRM---AWARTSLLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVI--------------YKCVMVVSQKVSFMRSFIKMSD

Query:  LMKPAYCRVVLGG
         MK  Y R++LGG
Subjt:  LMKPAYCRVVLGG

A0A5D3BUJ4 Retrotransposon protein1.6e-4853.42Show/hide
Query:  MTDCSLMTTVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNH-----WVRGARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPR
        M  CSLMTT+IESRIKLLKKTF AI E+RGP           K ++ K D  +H        GA AETFADI  NV TDNDS+PAEDG+  EFP MC PR
Subjt:  MTDCSLMTTVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNH-----WVRGARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPR

Query:  MNMLPEDMMGDRSGRSTPQRMAWARTS---LLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVI--------------YKCVMVVSQKVS
        MNM P+DMM  RS +S+  RM  +R      + Q ETY LI +CM+ ATDQLRTI E P+KA+S++D M  QVI               KC+M+V+QKVS
Subjt:  MNMLPEDMMGDRSGRSTPQRMAWARTS---LLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVI--------------YKCVMVVSQKVS

Query:  FMRSFIKMSDLMKPAYCRV
          RSFIKM D MK AYC+V
Subjt:  FMRSFIKMSDLMKPAYCRV

A0A5D3DLC6 Retrotransposon protein2.4e-4146.79Show/hide
Query:  LLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHWVR-----------------------------GARAETFADISLNVPTDNDSIPAEDGMGTE
        +LKKTF AIVE+RGP  S F WND +KCII +RDVF+HWVR                             GA +ETFADI  NV  DN+S  AEDG+  E
Subjt:  LLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHWVR-----------------------------GARAETFADISLNVPTDNDSIPAEDGMGTE

Query:  FPTMCSPRMNMLPEDMMGDRSGRSTPQRMAWA---RTSLLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVIYKCVMVVSQKVSFMRSFI
        FP MCSPRMNM PEDM+G RS RS+  R   +   R   + QFET+ LICE        +  +   P   +++K         KC+M+++QKVS MRSFI
Subjt:  FPTMCSPRMNMLPEDMMGDRSGRSTPQRMAWA---RTSLLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVIYKCVMVVSQKVSFMRSFI

Query:  KMSDLMKPAYCRVVLGGE
        KMSD M  AYC+V+LGG+
Subjt:  KMSDLMKPAYCRVVLGGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGATTGCAGTCTGATGACGACCGTCATCGAAAGCCGAATAAAGTTGTTAAAGAAGACGTTTCTGGCCATTGTTGAGTTGAGGGGCCCAACAGACAGTGACTTCAG
TTGGAACGATGACGTCAAGTGCATCATCGCCAAGAGGGACGTGTTCAATCATTGGGTCCGGGGGGCCCGTGCAGAGACCTTTGCAGACATCTCTTTAAACGTGCCGACTG
ACAACGACAGTATCCCCGCAGAGGATGGCATGGGCACGGAGTTCCCTACTATGTGCAGCCCGAGGATGAACATGTTGCCTGAGGATATGATGGGCGATCGATCTGGTCGG
TCGACCCCGCAGAGGATGGCATGGGCACGGACTTCCCTGCTATGTCAGTTTGAGACGTACAAACTGATTTGTGAATGTATGGATGCTGCAACTGATCAGTTGAGAACCAT
TACAGAATGCCCGAAGAAAGCTATCAGCCAGAAGGACGCGATGGCGACACAGGTGATTTATAAGTGTGTCATGGTAGTGAGTCAGAAGGTGTCCTTCATGAGAAGCTTCA
TCAAGATGTCTGATCTGATGAAGCCCGCTTACTGTAGGGTCGTCCTTGGCGGTGAATCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCGATTGCAGTCTGATGACGACCGTCATCGAAAGCCGAATAAAGTTGTTAAAGAAGACGTTTCTGGCCATTGTTGAGTTGAGGGGCCCAACAGACAGTGACTTCAG
TTGGAACGATGACGTCAAGTGCATCATCGCCAAGAGGGACGTGTTCAATCATTGGGTCCGGGGGGCCCGTGCAGAGACCTTTGCAGACATCTCTTTAAACGTGCCGACTG
ACAACGACAGTATCCCCGCAGAGGATGGCATGGGCACGGAGTTCCCTACTATGTGCAGCCCGAGGATGAACATGTTGCCTGAGGATATGATGGGCGATCGATCTGGTCGG
TCGACCCCGCAGAGGATGGCATGGGCACGGACTTCCCTGCTATGTCAGTTTGAGACGTACAAACTGATTTGTGAATGTATGGATGCTGCAACTGATCAGTTGAGAACCAT
TACAGAATGCCCGAAGAAAGCTATCAGCCAGAAGGACGCGATGGCGACACAGGTGATTTATAAGTGTGTCATGGTAGTGAGTCAGAAGGTGTCCTTCATGAGAAGCTTCA
TCAAGATGTCTGATCTGATGAAGCCCGCTTACTGTAGGGTCGTCCTTGGCGGTGAATCGTGA
Protein sequenceShow/hide protein sequence
MTDCSLMTTVIESRIKLLKKTFLAIVELRGPTDSDFSWNDDVKCIIAKRDVFNHWVRGARAETFADISLNVPTDNDSIPAEDGMGTEFPTMCSPRMNMLPEDMMGDRSGR
STPQRMAWARTSLLCQFETYKLICECMDAATDQLRTITECPKKAISQKDAMATQVIYKCVMVVSQKVSFMRSFIKMSDLMKPAYCRVVLGGES