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IVF0014413 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014413
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr05:12808962..12809240
RNA-Seq ExpressionIVF0014413
SyntenyIVF0014413
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025506.1 transcription initiation factor TFIID subunit 2-like [Cucumis melo var. makuwa]8.78e-3875Show/hide
Query:  MAVARYDIEKFNGKGDFTLWKAKIKAI---------------LPKTMTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY
        MAV RYDIEKF+GKG FTLWKAK+KAI               LPK MTQEEKETMENAAYGAIVLNLSDNVLREVIG+ET YGMW+KLEELY
Subjt:  MAVARYDIEKFNGKGDFTLWKAKIKAI---------------LPKTMTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY

TYJ96960.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.80e-2295.65Show/hide
Query:  MTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY
        MTQEEKETMEN AYGAIVLNLSDNVL+EVIGEETTYGMWKKLEELY
Subjt:  MTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY

XP_016899859.1 PREDICTED: uncharacterized protein LOC107990692 [Cucumis melo]3.57e-2368.42Show/hide
Query:  MAVARYDIEKFNGKGDFTLWKAKIKAI---------------LPKTMTQEEKETMENAAYGAIVLNLSDNVLREVI
        +AVARYDIEKF+GKGDFTLWKAKIKAI               LPK M QE+ ETMENAAY AIVLNLSD+VLRE+I
Subjt:  MAVARYDIEKFNGKGDFTLWKAKIKAI---------------LPKTMTQEEKETMENAAYGAIVLNLSDNVLREVI

XP_038889933.1 uncharacterized protein LOC120079695 [Benincasa hispida]2.98e-2148.91Show/hide
Query:  MAVARYDIEKFNGKGDFTLWKAKIKAIL---------------PKTMTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY
        M   R++IEKF+GK DF LWKAKIKA+L               PKT T  EKE +E  AYG IVLN++DNVLR+++  +T + +W KL E+Y
Subjt:  MAVARYDIEKFNGKGDFTLWKAKIKAIL---------------PKTMTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY

XP_038890043.1 uncharacterized protein LOC120079747 [Benincasa hispida]9.11e-2150Show/hide
Query:  MAVARYDIEKFNGKGDFTLWKAKIKAIL---------------PKTMTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY
        MA  RY+IEKF+ K DF LWK KIK +L               P+T+T+ EKET+E  A G IVLN++DNVLR+VI + T Y +W KL E+Y
Subjt:  MAVARYDIEKFNGKGDFTLWKAKIKAIL---------------PKTMTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY

TrEMBL top hitse value%identityAlignment
A0A1S4DV47 uncharacterized protein LOC1079906922.1e-1768.42Show/hide
Query:  MAVARYDIEKFNGKGDFTLWKAKIKAI---------------LPKTMTQEEKETMENAAYGAIVLNLSDNVLREVI
        +AVARYDIEKF+GKGDFTLWKAKIKAI               LPK M QE+ ETMENAAY AIVLNLSD+VLRE+I
Subjt:  MAVARYDIEKFNGKGDFTLWKAKIKAI---------------LPKTMTQEEKETMENAAYGAIVLNLSDNVLREVI

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-1443.48Show/hide
Query:  MAVARYDIEKFNGKGDFTLWKAKIKAI---------------LPKTMTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY
        M   +++IEKF+G GDFTLW  +I AI               LP T+T+ E+ET+E  AY  +++N++DNVLR+VI E T +  W+KL+ LY
Subjt:  MAVARYDIEKFNGKGDFTLWKAKIKAI---------------LPKTMTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY

A0A5A7V6Z9 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-1491.3Show/hide
Query:  MTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY
        MT EEKETMENA YGAIVLNLSDNVLREVI E+TTYGMWKKLEELY
Subjt:  MTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY

A0A5D3BAU2 Retrovirus-related Pol polyprotein from transposon TNT 1-946.6e-1695.65Show/hide
Query:  MTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY
        MTQEEKETMEN AYGAIVLNLSDNVL+EVIGEETTYGMWKKLEELY
Subjt:  MTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY

A0A5D3BQH4 Transcription initiation factor TFIID subunit 2-like3.4e-2875Show/hide
Query:  MAVARYDIEKFNGKGDFTLWKAKIKAI---------------LPKTMTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY
        MAV RYDIEKF+GKG FTLWKAK+KAI               LPK MTQEEKETMENAAYGAIVLNLSDNVLREVIG+ET YGMW+KLEELY
Subjt:  MAVARYDIEKFNGKGDFTLWKAKIKAI---------------LPKTMTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.4e-0932.61Show/hide
Query:  MAVARYDIEKFNGKGDFTLWKAKIKAIL---------------PKTMTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY
        M+  +Y++ KFNG   F+ W+ +++ +L               P TM  E+   ++  A  AI L+LSD+V+  +I E+T  G+W +LE LY
Subjt:  MAVARYDIEKFNGKGDFTLWKAKIKAIL---------------PKTMTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGTCGCAAGATATGATATTGAGAAGTTCAATGGTAAGGGAGATTTTACCTTATGGAAAGCAAAGATCAAAGCCATTCTACCTAAAACAATGACTCAAGAAGAAAA
AGAAACTATGGAAAATGCAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAGGGAGGTCATTGGTGAAGAAACAACTTATGGAATGTGGAAGAAATTGG
AAGAACTTTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGTCGCAAGATATGATATTGAGAAGTTCAATGGTAAGGGAGATTTTACCTTATGGAAAGCAAAGATCAAAGCCATTCTACCTAAAACAATGACTCAAGAAGAAAA
AGAAACTATGGAAAATGCAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAGGGAGGTCATTGGTGAAGAAACAACTTATGGAATGTGGAAGAAATTGG
AAGAACTTTATTAG
Protein sequenceShow/hide protein sequence
MAVARYDIEKFNGKGDFTLWKAKIKAILPKTMTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY