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IVF0014421 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014421
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPre-mRNA-processing protein 40A isoform X1
Genome locationchr07:1693392..1693950
RNA-Seq ExpressionIVF0014421
SyntenyIVF0014421
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064468.1 hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa]3.87e-98100Show/hide
Query:  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGG
        MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGG
Subjt:  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGG

Query:  WMTMNFFGNLSCKQLTAVRDDSLISSPVSKRTV
        WMTMNFFGNLSCKQLTAVRDDSLISSPVSKRTV
Subjt:  WMTMNFFGNLSCKQLTAVRDDSLISSPVSKRTV

KAE8649893.1 hypothetical protein Csa_012691 [Cucumis sativus]2.44e-5187.91Show/hide
Query:  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKL
        MACNNKTHSRGRVAFSWEN+PGVCKAAVAPP+ FCD   DDPLKK+LQPPPCTPARKGNKKL QKDGGAEDPFLAAY+ECTSEDDEK C L
Subjt:  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKL

KAG6591440.1 Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia]4.37e-3670.41Show/hide
Query:  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGF
        M C+N+ HSRGRVAFSWEN+PG CKAAVAPP  F    DDD  +KKL+PPPCT ARKG KK+ QKDG  EDPFLAA+REC++ +DEKNCKLK+NK GF
Subjt:  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGF

KAG7024319.1 hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyrosperma]2.43e-4070.41Show/hide
Query:  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGF
        M C+N+ HSRGRVAFSWEN+PG CKAAVAPP  F    DDD  +KKL+PPPCT ARKG KK+ QKDG  EDPFLAA+REC++ +DEKNCKLK+NK GF
Subjt:  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGF

OMO70852.1 hypothetical protein COLO4_28461 [Corchorus olitorius]1.17e-1535.86Show/hide
Query:  KTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTP--------------------------ARKGNKKLLQKDGGAEDPFLAAYRE
        K HS+G V FSWEN+PGVCK          D   +D   +KL PPPC P                          +R  +++ L+K   ++DPFLAAY+E
Subjt:  KTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTP--------------------------ARKGNKKLLQKDGGAEDPFLAAYRE

Query:  CTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRDDSLI
        CT   ++   KL KN  G G         + SCKQ  +VRDD+L+
Subjt:  CTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRDDSLI

TrEMBL top hitse value%identityAlignment
A0A0A0L2M9 Uncharacterized protein1.4e-6189.47Show/hide
Query:  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGG
        MACNNKTHSRGRVAFSWEN+PGVCKAAVAPP+ FCD   DDPLKK+LQPPPCTPARKGNKK LQKDGGAEDPFLAAY+ECTSEDDEK CKLKKNK GFGG
Subjt:  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGG

Query:  WMTMNFFGNLSCKQLTAVRDDSLISSPVSKRTV
        WMT NFF NLSCKQLTAVRDDSLISSP SKRTV
Subjt:  WMTMNFFGNLSCKQLTAVRDDSLISSPVSKRTV

A0A1R3HKK6 Uncharacterized protein2.2e-1135.86Show/hide
Query:  KTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPC--------------------------TPARKGNKKLLQKDGGAEDPFLAAYRE
        K HS+G V FSWEN+PGVCK          D   +D   +KL PPPC                           P+R  +++ L+K   ++DPFLAAY+E
Subjt:  KTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPC--------------------------TPARKGNKKLLQKDGGAEDPFLAAYRE

Query:  CTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRDDSLI
        CT   ++   KL KN  G G         + SCKQ  +VRDD+L+
Subjt:  CTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRDDSLI

A0A2N9EB23 Uncharacterized protein3.8e-1138.46Show/hide
Query:  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQP-----------------PPC---TPARKGNKKLLQKDGGAEDPFLAAYREC
        M  ++K HSRG + FSWEN+PGV K      N+ C    D  LK    P                 PPC   +P+R  +KK L+K    EDPFLAAY+EC
Subjt:  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQP-----------------PPC---TPARKGNKKLLQKDGGAEDPFLAAYREC

Query:  TSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRDDSL
        T  +  K    K  KY  G W         SCK   +VRDD+L
Subjt:  TSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRDDSL

A0A5A7VA56 Uncharacterized protein5.4e-74100Show/hide
Query:  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGG
        MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGG
Subjt:  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGG

Query:  WMTMNFFGNLSCKQLTAVRDDSLISSPVSKRTV
        WMTMNFFGNLSCKQLTAVRDDSLISSPVSKRTV
Subjt:  WMTMNFFGNLSCKQLTAVRDDSLISSPVSKRTV

A0A5B7BYG1 Uncharacterized protein3.7e-1438.46Show/hide
Query:  NNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPC----------------------TPARKGNKKLLQKDGGAEDPFLAAYRECT
        NNK HS+G V FSWEN+PGV K       R     D+   K KL PPPC                       P+R  +K+ L+K+   +DPFL AY+ECT
Subjt:  NNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPC----------------------TPARKGNKKLLQKDGGAEDPFLAAYRECT

Query:  SEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRDDSLI
            +     KK+  GFG    M+ F   SCKQ  +VRDD++I
Subjt:  SEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRDDSLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTGCAACAACAAAACCCATTCAAGAGGAAGAGTGGCTTTCTCGTGGGAGAATAGGCCCGGGGTGTGCAAAGCAGCGGTGGCGCCACCGAACCGCTTCTGTGACGA
CAACGACGACGACCCGTTGAAGAAGAAGCTGCAGCCACCGCCCTGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCTGCAGAAAGATGGGGGCGCTGAAGACCCTTTTC
TTGCGGCGTACAGAGAGTGCACGAGTGAAGATGATGAGAAGAATTGTAAGTTGAAGAAGAATAAATATGGGTTTGGAGGGTGGATGACGATGAACTTTTTTGGTAATCTG
TCTTGTAAGCAATTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCTAAACGAACAGTGTAA
mRNA sequenceShow/hide mRNA sequence
AATTAATCCGATCAACATCGAGCAATGGCCTGCAACAACAAAACCCATTCAAGAGGAAGAGTGGCTTTCTCGTGGGAGAATAGGCCCGGGGTGTGCAAAGCAGCGGTGGC
GCCACCGAACCGCTTCTGTGACGACAACGACGACGACCCGTTGAAGAAGAAGCTGCAGCCACCGCCCTGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCTGCAGAAAG
ATGGGGGCGCTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACGAGTGAAGATGATGAGAAGAATTGTAAGTTGAAGAAGAATAAATATGGGTTTGGAGGGTGGATG
ACGATGAACTTTTTTGGTAATCTGTCTTGTAAGCAATTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCTAAACGAACAGTGTAAAAAGAAATATGAAG
AAGTTTAAAGTTTTGGGGCCTAGAGGACAGGAATATTTGCCTTTTTTTTTTCATGTGTGAACTTAGTTTAAACTTTTTGTTTCATCCAATTAAACTTTTAATTAGTTTGT
GTTATATAC
Protein sequenceShow/hide protein sequence
MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNL
SCKQLTAVRDDSLISSPVSKRTV