; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0014455 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014455
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionprotein LOW PSII ACCUMULATION 2, chloroplastic
Genome locationtig00000656:144261..146526
RNA-Seq ExpressionIVF0014455
SyntenyIVF0014455
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR038789 - Protein LOW PSII ACCUMULATION 2 like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067684.1 protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa]1.15e-10598.19Show/hide
Query:  FIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTW
         I+S+NPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTW
Subjt:  FIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTW

Query:  LGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        LGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  LGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_004148133.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus]1.75e-9489.16Show/hide
Query:  FIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTW
         I+S+NPSES+KPISK+VDDAPIATSS       QGFGSSSPQSTSTSKSTPKS+KQKGKRQRASIIRRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTW
Subjt:  FIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTW

Query:  LGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        LGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  LGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_008439106.1 PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]1.57e-10396.99Show/hide
Query:  FIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTW
         I+S+NPSESEKPISKIVDDAPIATSSKP TSS QGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTW
Subjt:  FIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTW

Query:  LGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        LGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  LGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_023554492.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]6.09e-8277.01Show/hide
Query:  KYEKFIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSV----KQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRN
        K +  I+S+NPSESEKPISK VDDAP+ TSS      +QGFGS S QST++SKS+PK+     KQKGKRQRASIIRRSPVEKPVFVGEVDE+  KEQ +N
Subjt:  KYEKFIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSV----KQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRN

Query:  ESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        ESYFLLTWLGLG VILVEGIVLAASGFLPE+WD+ FVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K +KS
Subjt:  ESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_038899637.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]3.73e-9589.16Show/hide
Query:  FIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTW
         I S+NPSESEKPISK VDDAP+ATSSKP +SS QGFGSSS QST+TSKS+PK+VKQKGKRQRASIIRRSPVEKPVFVG+VDE+ AKEQSRNESYFLLTW
Subjt:  FIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTW

Query:  LGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        LGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  LGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

TrEMBL top hitse value%identityAlignment
A0A0A0L8E3 Uncharacterized protein7.1e-7289.7Show/hide
Query:  IQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWL
        I+S+NPSES+KPISK+VDDAPIA      TSS QGFGSSSPQSTSTSKSTPKS+KQKGKRQRASIIRRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTWL
Subjt:  IQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWL

Query:  GLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        GLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  GLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A1S3AXX6 protein LOW PSII ACCUMULATION 2, chloroplastic6.0e-7997.58Show/hide
Query:  IQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWL
        I+S+NPSESEKPISKIVDDAPIATSSKP TSS QGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWL
Subjt:  IQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWL

Query:  GLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        GLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  GLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A5A7VJY0 Protein LOW PSII ACCUMULATION 21.4e-8098.79Show/hide
Query:  IQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWL
        I+S+NPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWL
Subjt:  IQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTWL

Query:  GLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        GLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  GLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A6J1CH98 protein LOW PSII ACCUMULATION 2, chloroplastic5.1e-6280.72Show/hide
Query:  QSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTS--TSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTW
        Q+ + SESEK ISK+VDDA +ATSSK  +SS+QGFGSS  QSTS  + K+TP   KQKGKRQRASIIRRSPVEKPVFVG+VDE+ AKEQ RNESYFLLTW
Subjt:  QSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTS--TSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRNESYFLLTW

Query:  LGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        LGLG VILVEGIVLAASGFLPEEWD+  VKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEK K EKS
Subjt:  LGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A6J1FNA7 protein LOW PSII ACCUMULATION 2, chloroplastic1.3e-6277.01Show/hide
Query:  KYEKFIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSV----KQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRN
        K +  I+S+NPSESEKPISK VDDAP+       TSS+QGFGS S QST++SKS+PK+     KQKGKRQRASIIRRSPVEKPVFVGEVDE+  KEQ +N
Subjt:  KYEKFIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSV----KQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRN

Query:  ESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        ESYFLLTWLGLG VILVEGIVLAASGFLPE+WD+ FVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K +KS
Subjt:  ESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

SwissProt top hitse value%identityAlignment
F4KDA6 Protein LPA24.9e-3853.18Show/hide
Query:  YEKFIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTST-----SKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRN
        Y  F  + NP  + K  +  ++       S+   SSS G G  SP S+S+     S +T  + K KGKR+   + RR+PVEKPVF+ E     A+EQ +N
Subjt:  YEKFIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTST-----SKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRN

Query:  ESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK
        E+ FLLTWLGLG+VIL+EGI+LAASGFLPEE D+LFVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+K ++
Subjt:  ESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK

Arabidopsis top hitse value%identityAlignment
AT5G51545.1 low psii accumulation23.5e-3953.18Show/hide
Query:  YEKFIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTST-----SKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRN
        Y  F  + NP  + K  +  ++       S+   SSS G G  SP S+S+     S +T  + K KGKR+   + RR+PVEKPVF+ E     A+EQ +N
Subjt:  YEKFIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTST-----SKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQSRN

Query:  ESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK
        E+ FLLTWLGLG+VIL+EGI+LAASGFLPEE D+LFVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+K ++
Subjt:  ESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGAGCGTGTGGGAATTTAGGAAGTGGAGGAGGGCACAACATAAAATATGAAAAGTTCATCCAAAGTGAAAACCCGTCTGAATCTGAGAAACCCATTTCCAAAAT
TGTTGATGATGCTCCAATTGCGACTTCCTCCAAGCCATATACCTCATCGTCTCAAGGTTTCGGCTCTTCATCGCCTCAATCGACGTCCACGAGCAAATCAACTCCAAAGT
CTGTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTTGATGAACAGGTTGCTAAGGAACAGAGC
AGGAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCGAGGGGATTGTGCTTGCAGCATCTGGTTTCTTACCGGAAGAGTGGGACAGGCT
CTTCGTCAAATATTTGTACCCTTCCTTCACACCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATG
AAAAATCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGAGCGTGTGGGAATTTAGGAAGTGGAGGAGGGCACAACATAAAATATGAAAAGTTCATCCAAAGTGAAAACCCGTCTGAATCTGAGAAACCCATTTCCAAAAT
TGTTGATGATGCTCCAATTGCGACTTCCTCCAAGCCATATACCTCATCGTCTCAAGGTTTCGGCTCTTCATCGCCTCAATCGACGTCCACGAGCAAATCAACTCCAAAGT
CTGTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCGGTGTTTGTTGGAGAAGTTGATGAACAGGTTGCTAAGGAACAGAGC
AGGAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCGAGGGGATTGTGCTTGCAGCATCTGGTTTCTTACCGGAAGAGTGGGACAGGCT
CTTCGTCAAATATTTGTACCCTTCCTTCACACCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATG
AAAAATCATAA
Protein sequenceShow/hide protein sequence
MKGACGNLGSGGGHNIKYEKFIQSENPSESEKPISKIVDDAPIATSSKPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAKEQS
RNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS