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IVF0014540 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014540
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr03:19443370..19444014
RNA-Seq ExpressionIVF0014540
SyntenyIVF0014540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031701.1 hypothetical protein E6C27_scaffold139G004850 [Cucumis melo var. makuwa]3.09e-127100Show/hide
Query:  MMLSYKQTKIRSEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPPSNMKREREARSALPHLKDANKAIREAFGWRKFFKGTSKIRLEVVRKFYASDHN
        MMLSYKQTKIRSEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPPSNMKREREARSALPHLKDANKAIREAFGWRKFFKGTSKIRLEVVRKFYASDHN
Subjt:  MMLSYKQTKIRSEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPPSNMKREREARSALPHLKDANKAIREAFGWRKFFKGTSKIRLEVVRKFYASDHN

Query:  QAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASVWLFS
        QAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASVWLFS
Subjt:  QAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASVWLFS

KAA0050753.1 hypothetical protein E6C27_scaffold46449G00020 [Cucumis melo var. makuwa]5.33e-5257.07Show/hide
Query:  LSYKQTKIRSEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPPSNMKRER-EARSALPHLK----DANKAIREAFGWRKFFKGTSKIRLEVVRKFYAS
        LS KQT IR EDVELAEELK EVEAMS +   +    + R +    + KR+R +  ++ P       +  KA + +    K  KGTSKIRL+V+RKFY S
Subjt:  LSYKQTKIRSEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPPSNMKRER-EARSALPHLK----DANKAIREAFGWRKFFKGTSKIRLEVVRKFYAS

Query:  DHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASV
        D NQAEYY IMD KS YFN+EAINKLY+ PFDA+TP+  LIT TLKRQA EAL+TI WLG E DIT T  YLLYPH+LT +AS+
Subjt:  DHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASV

KAA0057278.1 hypothetical protein E6C27_scaffold280G001190 [Cucumis melo var. makuwa]1.93e-2251.97Show/hide
Query:  LSYKQTKIRSEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPPS--NMKREREARSALPHLKDANKAIREAFGWRKFFKGTSKIRLEVVRKFYASDHN
        LSYK+  I  EDVEL EELK +              +R RGR+ P   + +  +     L   K  +  I+ AFG RKFFKGTSKIRLEVVRKFYASDH 
Subjt:  LSYKQTKIRSEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPPS--NMKREREARSALPHLKDANKAIREAFGWRKFFKGTSKIRLEVVRKFYASDHN

Query:  QAEYYAIMDEKSAYFNIEAINKLYNFP
        QAEYYAIMD KS YFN++AIN     P
Subjt:  QAEYYAIMDEKSAYFNIEAINKLYNFP

KAA0057357.1 hypothetical protein E6C27_scaffold280G002180 [Cucumis melo var. makuwa]9.25e-4675Show/hide
Query:  KFFKGTSKIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTI
        K  KGTSKIRL+VVRKFY SD NQAEYY IMD KS YFN+EAINKLY+ PFDAETP+  LIT TLKRQA EAL+TI WLG E DIT TG YLLYPH+LT 
Subjt:  KFFKGTSKIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTI

Query:  EASV
        +AS+
Subjt:  EASV

KAA0062900.1 gag/pol protein [Cucumis melo var. makuwa]1.36e-1542.57Show/hide
Query:  KIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTG-KYLLYPHQLTIEASVWL
        KIR++VV KFY    N ++ +  ++++  YFN+E IN+LYN P DAE     ++T + K  A EAL+ +AW G   ++ P   +Y LYPH LT +A+VW+
Subjt:  KIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTG-KYLLYPHQLTIEASVWL

Query:  F
        F
Subjt:  F

TrEMBL top hitse value%identityAlignment
A0A5A7SQ81 Uncharacterized protein1.3e-97100Show/hide
Query:  MMLSYKQTKIRSEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPPSNMKREREARSALPHLKDANKAIREAFGWRKFFKGTSKIRLEVVRKFYASDHN
        MMLSYKQTKIRSEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPPSNMKREREARSALPHLKDANKAIREAFGWRKFFKGTSKIRLEVVRKFYASDHN
Subjt:  MMLSYKQTKIRSEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPPSNMKREREARSALPHLKDANKAIREAFGWRKFFKGTSKIRLEVVRKFYASDHN

Query:  QAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASVWLFS
        QAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASVWLFS
Subjt:  QAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASVWLFS

A0A5A7U4E3 Uncharacterized protein8.4e-4157.07Show/hide
Query:  LSYKQTKIRSEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPPSNMKRER-EARSALPHLK----DANKAIREAFGWRKFFKGTSKIRLEVVRKFYAS
        LS KQT IR EDVELAEELK EVEAMS +   +    + R +    + KR+R +  ++ P       +  KA + +    K  KGTSKIRL+V+RKFY S
Subjt:  LSYKQTKIRSEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPPSNMKRER-EARSALPHLK----DANKAIREAFGWRKFFKGTSKIRLEVVRKFYAS

Query:  DHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASV
        D NQAEYY IMD KS YFN+EAINKLY+ PFDA+TP+  LIT TLKRQA EAL+TI WLG E DIT T  YLLYPH+LT +AS+
Subjt:  DHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASV

A0A5A7URT6 Uncharacterized protein2.4e-3575Show/hide
Query:  KFFKGTSKIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTI
        K  KGTSKIRL+VVRKFY SD NQAEYY IMD KS YFN+EAINKLY+ PFDAETP+  LIT TLKRQA EAL+TI WLG E DIT TG YLLYPH+LT 
Subjt:  KFFKGTSKIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTI

Query:  EASV
        +AS+
Subjt:  EASV

A0A5A7V6M5 Gag/pol protein1.9e-1342.57Show/hide
Query:  KIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTG-KYLLYPHQLTIEASVWL
        KIR++VV KFY    N ++ +  ++++  YFN+E IN+LYN P DAE     ++T + K  A EAL+ +AW G   ++ P   +Y LYPH LT +A+VW+
Subjt:  KIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTG-KYLLYPHQLTIEASVWL

Query:  F
        F
Subjt:  F

A0A5D3DV25 Uncharacterized protein1.3e-1751.97Show/hide
Query:  LSYKQTKIRSEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPP--SNMKREREARSALPHLKDANKAIREAFGWRKFFKGTSKIRLEVVRKFYASDHN
        LSYK+  I  EDVEL EELK +              +R RGR+ P   + +  +     L   K  +  I+ AFG RKFFKGTSKIRLEVVRKFYASDH 
Subjt:  LSYKQTKIRSEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPP--SNMKREREARSALPHLKDANKAIREAFGWRKFFKGTSKIRLEVVRKFYASDHN

Query:  QAEYYAIMDEKSAYFNIEAINKLYNFP
        QAEYYAIMD KS YFN++AIN     P
Subjt:  QAEYYAIMDEKSAYFNIEAINKLYNFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTTGTCTTACAAGCAAACGAAAATAAGAAGTGAAGATGTTGAGCTGGCTGAAGAGCTCAAGCGTGAGGTAGAGGCGATGAGCCAAGAGATGATGACAAAAGGGCC
TCACCTAAGAAGACGAGGAAGAAAGCCGCCATCAAACATGAAAAGAGAAAGAGAAGCAAGGTCGGCACTTCCACACCTGAAGGATGCCAACAAGGCGATAAGGGAGGCGT
TTGGATGGAGGAAGTTCTTCAAGGGGACTTCTAAGATTCGGTTGGAGGTTGTCAGAAAATTCTACGCATCAGATCACAACCAAGCCGAATACTATGCAATAATGGATGAG
AAAAGTGCCTACTTCAACATTGAGGCCATTAATAAATTGTACAATTTTCCCTTTGATGCTGAGACACCAGACCATGTGTTAATCACTGCAACTTTGAAAAGGCAGGCCAT
GGAAGCCTTGGAAACTATCGCGTGGCTCGGGGCAGAATATGATATCACTCCAACAGGAAAGTACCTATTGTATCCACACCAGCTGACCATTGAGGCGAGTGTGTGGCTTT
TTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGTTGTCTTACAAGCAAACGAAAATAAGAAGTGAAGATGTTGAGCTGGCTGAAGAGCTCAAGCGTGAGGTAGAGGCGATGAGCCAAGAGATGATGACAAAAGGGCC
TCACCTAAGAAGACGAGGAAGAAAGCCGCCATCAAACATGAAAAGAGAAAGAGAAGCAAGGTCGGCACTTCCACACCTGAAGGATGCCAACAAGGCGATAAGGGAGGCGT
TTGGATGGAGGAAGTTCTTCAAGGGGACTTCTAAGATTCGGTTGGAGGTTGTCAGAAAATTCTACGCATCAGATCACAACCAAGCCGAATACTATGCAATAATGGATGAG
AAAAGTGCCTACTTCAACATTGAGGCCATTAATAAATTGTACAATTTTCCCTTTGATGCTGAGACACCAGACCATGTGTTAATCACTGCAACTTTGAAAAGGCAGGCCAT
GGAAGCCTTGGAAACTATCGCGTGGCTCGGGGCAGAATATGATATCACTCCAACAGGAAAGTACCTATTGTATCCACACCAGCTGACCATTGAGGCGAGTGTGTGGCTTT
TTTCATGA
Protein sequenceShow/hide protein sequence
MMLSYKQTKIRSEDVELAEELKREVEAMSQEMMTKGPHLRRRGRKPPSNMKREREARSALPHLKDANKAIREAFGWRKFFKGTSKIRLEVVRKFYASDHNQAEYYAIMDE
KSAYFNIEAINKLYNFPFDAETPDHVLITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASVWLFS