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IVF0014568 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014568
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr04:21919393..21919811
RNA-Seq ExpressionIVF0014568
SyntenyIVF0014568
Gene Ontology termsGO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003972 - RNA ligase (ATP) activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047411.1 gag/pol protein [Cucumis melo var. makuwa]9.20e-3970Show/hide
Query:  RSSGVRNKKMQARMPQNQFFHRGVKSSPATVSLFCVGH--SASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEELRCNPKRSKRWPMLSQRVVNAR
        R+S  R +KM+ARMP  QFFHRGVK+SP TVSLFCV     AS+FGT TPRTSVY LGI+PH F Q I R+ASSLE ELRC+PKRSKRWPML QRV NA 
Subjt:  RSSGVRNKKMQARMPQNQFFHRGVKSSPATVSLFCVGH--SASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEELRCNPKRSKRWPMLSQRVVNAR

Query:  PVSETNENAF
         VSET E  F
Subjt:  PVSETNENAF

KAA0047414.1 gag/pol protein [Cucumis melo var. makuwa]1.18e-2845.95Show/hide
Query:  RSSGVRNKKMQARMPQNQFFHRG----------------------------VKSSPATVSLFCVGH------------SASSFGTRTPRTSVYTLGIIPH
        R+ GVR+KK++ RMP+ QFFHRG                             K+ P + +     H            S SSF T TPRTSVY  GI+PH
Subjt:  RSSGVRNKKMQARMPQNQFFHRG----------------------------VKSSPATVSLFCVGH------------SASSFGTRTPRTSVYTLGIIPH

Query:  PFSQGIGREASSLEEELRCNPKRSKRWPMLSQRVVNARPVSETNENAF
        PF Q IGREASSLE +LRCNP++SK+WPML QRV N R +S T ENAF
Subjt:  PFSQGIGREASSLEEELRCNPKRSKRWPMLSQRVVNARPVSETNENAF

KAA0051943.1 hypothetical protein E6C27_scaffold60G004060 [Cucumis melo var. makuwa]1.87e-2372.86Show/hide
Query:  SASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEELRCNPKRSKRWPMLSQRVVNARPVSETNENAF
        S +SFGT TPRTSVY  GI+P  FSQ IG +ASSLEEEL+CNPKRSKRWP+  QRV NAR V ET ENAF
Subjt:  SASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEELRCNPKRSKRWPMLSQRVVNARPVSETNENAF

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.77e-2465.22Show/hide
Query:  RSSGVRNKKMQARMPQNQFFHRGVKSSPATVSLFCVGH--SASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEELR------CNPKRS
        R+SGVR++K++ARMP+  FFHR VKS P TVSLFCV    SASSFGT  PRTSVY  GI+PHPFSQGIG E SSLE EL       C PK S
Subjt:  RSSGVRNKKMQARMPQNQFFHRGVKSSPATVSLFCVGH--SASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEELR------CNPKRS

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]6.25e-2453.33Show/hide
Query:  MANALLTSGERSS---GVRNKKMQARMPQNQFFHRGVKSSPATVSLFCVGHSASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEELRCNPKRSKRW
        MANA  TSG+ S+   G    +    +P       G+   P + ++       SSFGT TPRT VY   I+PHPFSQ IG EASSLEEELRCNPK+SKRW
Subjt:  MANALLTSGERSS---GVRNKKMQARMPQNQFFHRGVKSSPATVSLFCVGHSASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEELRCNPKRSKRW

Query:  PMLSQRVVNARPVSETNENA
        PML QRV NARP S  +ENA
Subjt:  PMLSQRVVNARPVSETNENA

TrEMBL top hitse value%identityAlignment
A0A5A7U7P6 Uncharacterized protein5.8e-1972.86Show/hide
Query:  SASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEELRCNPKRSKRWPMLSQRVVNARPVSETNENAF
        S +SFGT TPRTSVY  GI+P  FSQ IG +ASSLEEEL+CNPKRSKRWP+  QRV NAR V ET ENAF
Subjt:  SASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEELRCNPKRSKRWPMLSQRVVNARPVSETNENAF

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed2.0e-1953.33Show/hide
Query:  MANALLTSGERSS---GVRNKKMQARMPQNQFFHRGVKSSPATVSLFCVGHSASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEELRCNPKRSKRW
        MANA  TSG+ S+   G    +    +P       G+   P + ++       SSFGT TPRT VY   I+PHPFSQ IG EASSLEEELRCNPK+SKRW
Subjt:  MANALLTSGERSS---GVRNKKMQARMPQNQFFHRGVKSSPATVSLFCVGHSASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEELRCNPKRSKRW

Query:  PMLSQRVVNARPVSETNENA
        PML QRV NARP S  +ENA
Subjt:  PMLSQRVVNARPVSETNENA

A0A5A7VGQ5 Uncharacterized protein4.0e-2065.22Show/hide
Query:  RSSGVRNKKMQARMPQNQFFHRGVKSSPATVSLFCVGH--SASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEEL------RCNPKRS
        R+SGVR++K++ARMP+  FFHR VKS P TVSLFCV    SASSFGT  PRTSVY  GI+PHPFSQGIG E SSLE EL       C PK S
Subjt:  RSSGVRNKKMQARMPQNQFFHRGVKSSPATVSLFCVGH--SASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEEL------RCNPKRS

A0A5D3CUK8 Gag/pol protein7.7e-3270Show/hide
Query:  RSSGVRNKKMQARMPQNQFFHRGVKSSPATVSLFCV--GHSASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEELRCNPKRSKRWPMLSQRVVNAR
        R+S  R +KM+ARMP  QFFHRGVK+SP TVSLFCV     AS+FGT TPRTSVY LGI+PH F Q I R+ASSLE ELRC+PKRSKRWPML QRV NA 
Subjt:  RSSGVRNKKMQARMPQNQFFHRGVKSSPATVSLFCV--GHSASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEELRCNPKRSKRWPMLSQRVVNAR

Query:  PVSETNENAF
         VSET E  F
Subjt:  PVSETNENAF

A0A5D3CV18 Gag/pol protein2.3e-2345.95Show/hide
Query:  RSSGVRNKKMQARMPQNQFFHRG----------------------------VKSSPATVSLFCVGH------------SASSFGTRTPRTSVYTLGIIPH
        R+ GVR+KK++ RMP+ QFFHRG                             K+ P + +     H            S SSF T TPRTSVY  GI+PH
Subjt:  RSSGVRNKKMQARMPQNQFFHRG----------------------------VKSSPATVSLFCVGH------------SASSFGTRTPRTSVYTLGIIPH

Query:  PFSQGIGREASSLEEELRCNPKRSKRWPMLSQRVVNARPVSETNENAF
        PF Q IGREASSLE +LRCNP++SK+WPML QRV N R +S T ENAF
Subjt:  PFSQGIGREASSLEEELRCNPKRSKRWPMLSQRVVNARPVSETNENAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAATGCTCTCCTAACGAGTGGCGAACGCTCGTCCGGTGTAAGAAACAAGAAAATGCAAGCGAGAATGCCTCAGAATCAGTTTTTCCATCGCGGGGTAAAAAGTAG
TCCTGCAACGGTTTCTTTGTTTTGTGTTGGTCATAGTGCTTCGAGCTTCGGCACTCGTACTCCGAGGACTTCAGTCTACACTCTTGGCATAATCCCTCACCCGTTTTCCC
AAGGAATAGGTCGGGAGGCGAGCTCGCTTGAGGAAGAACTCAGGTGCAACCCAAAACGATCGAAAAGATGGCCAATGCTCTCCCAACGAGTGGTAAATGCTCGTCCAGTG
TCAGAAACCAATGAGAACGCATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAATGCTCTCCTAACGAGTGGCGAACGCTCGTCCGGTGTAAGAAACAAGAAAATGCAAGCGAGAATGCCTCAGAATCAGTTTTTCCATCGCGGGGTAAAAAGTAG
TCCTGCAACGGTTTCTTTGTTTTGTGTTGGTCATAGTGCTTCGAGCTTCGGCACTCGTACTCCGAGGACTTCAGTCTACACTCTTGGCATAATCCCTCACCCGTTTTCCC
AAGGAATAGGTCGGGAGGCGAGCTCGCTTGAGGAAGAACTCAGGTGCAACCCAAAACGATCGAAAAGATGGCCAATGCTCTCCCAACGAGTGGTAAATGCTCGTCCAGTG
TCAGAAACCAATGAGAACGCATTTTAG
Protein sequenceShow/hide protein sequence
MANALLTSGERSSGVRNKKMQARMPQNQFFHRGVKSSPATVSLFCVGHSASSFGTRTPRTSVYTLGIIPHPFSQGIGREASSLEEELRCNPKRSKRWPMLSQRVVNARPV
SETNENAF