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IVF0014600 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0014600
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr04:15041028..15041495
RNA-Seq ExpressionIVF0014600
SyntenyIVF0014600
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032755.1 reverse transcriptase [Cucumis melo var. makuwa]1.45e-9896.75Show/hide
Query:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEA+VNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDK EQ F+
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
KAA0036001.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.42e-9694.81Show/hide
Query:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
        MPFGLTNAPAVFMD MNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVSAKGV VDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
        ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTA+TRKN KFEWSDKCEQ F+
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
KAA0036100.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.35e-9996.1Show/hide
Query:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
        M FGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVY VDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
        ERP SATEVRSFLGLAGYYR FIEDFSRLALPLTALTRKNVKFEWSDKCEQ F+
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
TYK23887.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.20e-10198.05Show/hide
Query:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQ F+
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
TYK25908.1 Retrotransposon protein [Cucumis melo var. makuwa]8.45e-10298.05Show/hide
Query:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQ F+
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
TrEMBL top hitse value%identityAlignment
A0A5A7T1Y5 Reverse transcriptase5.9e-8098.05Show/hide
Query:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQ F+
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
A0A5A7U2V7 Reverse transcriptase5.9e-8098.05Show/hide
Query:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQ F+
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
A0A5A7UUL6 Reverse transcriptase5.9e-8098.05Show/hide
Query:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQ F+
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
A0A5D3BHI1 Reverse transcriptase5.9e-8098.05Show/hide
Query:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQ F+
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
A0A5D3BS67 Reverse transcriptase5.9e-8098.05Show/hide
Query:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
        MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQ F+
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFR
SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.2e-2940.97Show/hide
Query:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
        MPFGL NAPA F   MN I    L++  +V++DDI+V+S   + H + L +V + L +  L  +  KCEF  ++  FLGHV++  G+  +P+K+EA+  +
Subjt:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFE
          PT   E+++FLGL GYYR+FI +F+ +A P+T   +KN+K +
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFE
P0CT34 Transposon Tf2-1 polyprotein5.2e-2535.48Show/hide
Query:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
        MP+G++ APA F   +N I     +  V+ ++DDIL++S     H +H++ VLQ L+   L    +KCEF   QV F+G+ +S KG +   + ++ V+ W
Subjt:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFRN
        ++P +  E+R FLG   Y R+FI   S+L  PL  L +K+V+++W+    Q   N
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFRN
P0CT41 Transposon Tf2-12 polyprotein5.2e-2535.48Show/hide
Query:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
        MP+G++ APA F   +N I     +  V+ ++DDIL++S     H +H++ VLQ L+   L    +KCEF   QV F+G+ +S KG +   + ++ V+ W
Subjt:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFRN
        ++P +  E+R FLG   Y R+FI   S+L  PL  L +K+V+++W+    Q   N
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFRN
P20825 Retrovirus-related Pol polyprotein from transposon 2972.3e-2839.47Show/hide
Query:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
        MPFGL NAPA F   MN I    L++  +V++DDI+++S     H   +++V   L +  L  +  KCEF  ++  FLGH+V+  G+  +P KV+A+V++
Subjt:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQI
          PT   E+R+FLGL GYYR+FI +++ +A P+T+  +K  K + + K E I
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQI
Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.6e-2942.38Show/hide
Query:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW
        +PFGL NAPA+F  +++ I   ++ +   V+IDDI+V+S D ++H ++LR+VL +L +  L     K  F   QV FLG++V+A G+  DP+KV A+   
Subjt:  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTR---KNVKFEWSDK
          PTS  E++ FLG+  YYR+FI+D++++A PLT LTR    N+K   S K
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTR---KNVKFEWSDK
Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein5.0e-2344.04Show/hide
Query:  HLRIVLQTLREKQLYAKFSKCEFWLEQVVFLG--HVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEW
        HL +VLQ   + Q YA   KC F   Q+ +LG  H++S +GVS DP K+EA+V W  P + TE+R FLGL GYYRRF++++ ++  PLT L +KN   +W
Subjt:  HLRIVLQTLREKQLYAKFSKCEFWLEQVVFLG--HVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEW

Query:  SDKCEQIFR
        ++     F+
Subjt:  SDKCEQIFR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCGGTATTTAGATCAGTTTGTGATTGTGTTCATTGATGATATATTAGT
TTACTCGGTTGACAGAGAATCTCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGAAAAACAGTTATACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAAC
AAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGT
AGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCTCGATTGGCATTGCCTTTGACCGCTTTGACAAGGAAGAATGTTAAGTTTGAGTGGTCAGA
TAAATGCGAGCAAATTTTCAGGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCGGTATTTAGATCAGTTTGTGATTGTGTTCATTGATGATATATTAGT
TTACTCGGTTGACAGAGAATCTCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGAAAAACAGTTATACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAAC
AAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGT
AGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCTCGATTGGCATTGCCTTTGACCGCTTTGACAAGGAAGAATGTTAAGTTTGAGTGGTCAGA
TAAATGCGAGCAAATTTTCAGGAATTGA
Protein sequenceShow/hide protein sequence
MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVR
SFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFRN